View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7284_high_1 (Length: 221)

Name: NF7284_high_1
Description: NF7284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7284_high_1
NF7284_high_1
[»] chr8 (4 HSPs)
chr8 (10-221)||(31915063-31915276)
chr8 (156-219)||(16162849-16162912)
chr8 (174-215)||(25881351-25881392)
chr8 (174-219)||(37822595-37822640)
[»] scaffold0141 (1 HSPs)
scaffold0141 (166-214)||(9706-9754)
[»] chr4 (2 HSPs)
chr4 (156-216)||(32071955-32072015)
chr4 (166-216)||(22523772-22523822)
[»] chr6 (4 HSPs)
chr6 (154-214)||(281764-281824)
chr6 (154-217)||(33737661-33737724)
chr6 (167-212)||(8431763-8431808)
chr6 (157-212)||(8420115-8420171)
[»] chr3 (4 HSPs)
chr3 (157-217)||(20210847-20210907)
chr3 (170-217)||(27294437-27294484)
chr3 (156-219)||(44014716-44014779)
chr3 (177-217)||(50015977-50016017)
[»] chr1 (3 HSPs)
chr1 (157-217)||(4868490-4868550)
chr1 (158-215)||(24417655-24417712)
chr1 (181-217)||(34536249-34536285)
[»] chr7 (2 HSPs)
chr7 (159-214)||(8427107-8427162)
chr7 (170-219)||(25670518-25670567)
[»] chr5 (1 HSPs)
chr5 (156-214)||(40335791-40335849)


Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 10 - 221
Target Start/End: Original strand, 31915063 - 31915276
Alignment:
Q  10 catcagtacccctgttgaagaacaattacaaagtactcaatagaaatccgtcccaannnnnnnnnn--gtctgaaaattacttagttcctccatacccaa 107  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||    
T  31915063 catcagtacccctgttgaagaacaattacgaagtactcaatagaaatccgtcccaattttttttttttgtctgaaaattacttagttcctccatacccaa 31915162  T
Q  108 atttgatatctcagtgatttttaactttttatttgactaaatatatgtctgtttggactgatttacttgagtttatctattcacataaatacttgtgaga 207  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31915163 atttgatatctcactgatttttaactttttatttgactaaatatatgtctgtttggactgatttacttgagtttatctattcacataaatacttgtgaga 31915262  T
Q  208 ctgtttgagaaagc 221  Q
    ||||||||||||||    
T  31915263 ctgtttgagaaagc 31915276  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 16162912 - 16162849
Alignment:
Q  156 ctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaa 219  Q
    ||||||||| ||  ||| ||||||||||||| |  |||||| ||||||||||||||||||||||    
T  16162912 ctgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttgagaaa 16162849  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 25881351 - 25881392
Alignment:
Q  174 ttgagtttatctattcacataaatacttgtgagactgtttga 215  Q
    ||||||||||||| | |||||| |||||||||||||||||||    
T  25881351 ttgagtttatctactgacataagtacttgtgagactgtttga 25881392  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 37822595 - 37822640
Alignment:
Q  174 ttgagtttatctattcacataaatacttgtgagactgtttgagaaa 219  Q
    ||||||||||||| | |||||| || ||||||||||||||||||||    
T  37822595 ttgagtttatctaatgacataattatttgtgagactgtttgagaaa 37822640  T

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Target: scaffold0141 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 9706 - 9754
Alignment:
Q  166 tgatttacttgagtttatctattcacataaatacttgtgagactgtttg 214  Q
    ||||||| ||||||||||||| | |||||||||||||||||||||||||    
T  9706 tgatttatttgagtttatctactaacataaatacttgtgagactgtttg 9754  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 32072015 - 32071955
Alignment:
Q  156 ctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgag 216  Q
    ||||||||||||| ||| ||||||||||||||| ||||||  ||||||||||| |||||||    
T  32072015 ctgtttggactgacttatttgagtttatctattgacataagcacttgtgagacagtttgag 32071955  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 22523822 - 22523772
Alignment:
Q  166 tgatttacttgagtttatctattcacataaatacttgtgagactgtttgag 216  Q
    ||||||| | ||||||||||| | |||||| ||||||||||||||||||||    
T  22523822 tgatttattcgagtttatctactgacataagtacttgtgagactgtttgag 22523772  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 281764 - 281824
Alignment:
Q  154 gtctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttg 214  Q
    ||||||||||| ||| ||||||||| |||| || | |||||| ||||||||||||||||||    
T  281764 gtctgtttggattgacttacttgagattatgtagtgacataagtacttgtgagactgtttg 281824  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 33737724 - 33737661
Alignment:
Q  154 gtctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgaga 217  Q
    ||||||||||| ||| ||| | ||||||||||||| ||||||| |||||||  |||||||||||    
T  33737724 gtctgtttggaatgacttattcgagtttatctattgacataaacacttgtgcaactgtttgaga 33737661  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 8431763 - 8431808
Alignment:
Q  167 gatttacttgagtttatctattcacataaatacttgtgagactgtt 212  Q
    |||||||||||||||||||||| || |||  |||||||||||||||    
T  8431763 gatttacttgagtttatctattgacttaagcacttgtgagactgtt 8431808  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 8420115 - 8420171
Alignment:
Q  157 tgtttggactga-tttacttgagtttatctattcacataaatacttgtgagactgtt 212  Q
    |||||||| ||| |||| ||||| ||||||||| ||||||| |||||||||||||||    
T  8420115 tgtttggattgactttatttgagcttatctattgacataaacacttgtgagactgtt 8420171  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 20210847 - 20210907
Alignment:
Q  157 tgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgaga 217  Q
    |||||||| ||||||| ||||| ||||||| | ||||||  ||||||||||||||||||||    
T  20210847 tgtttggattgatttatttgaggttatctactgacataaccacttgtgagactgtttgaga 20210907  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 27294484 - 27294437
Alignment:
Q  170 ttacttgagtttatctattcacataaatacttgtgagactgtttgaga 217  Q
    |||||||||||||||||||  |||||  ||||||||||||||||||||    
T  27294484 ttacttgagtttatctattgtcataagcacttgtgagactgtttgaga 27294437  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 44014716 - 44014779
Alignment:
Q  156 ctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgagaaa 219  Q
    ||||||||| ||  ||| ||||||||||||| |  |||||| ||||||||||||||||||||||    
T  44014716 ctgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttgagaaa 44014779  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 50016017 - 50015977
Alignment:
Q  177 agtttatctattcacataaatacttgtgagactgtttgaga 217  Q
    ||||||||||||  |||||| ||||||||||||||||||||    
T  50016017 agtttatctattggcataaacacttgtgagactgtttgaga 50015977  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 4868550 - 4868490
Alignment:
Q  157 tgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttgaga 217  Q
    |||||||| ||||||| |||| |||||||||| |||||   ||||||||||||||||||||    
T  4868550 tgtttggattgatttatttgaatttatctattgacataggcacttgtgagactgtttgaga 4868490  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 24417655 - 24417712
Alignment:
Q  158 gtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttga 215  Q
    ||||||| ||| ||| ||||||||||||||| | |||| ||||||||||||| |||||    
T  24417655 gtttggattgacttatttgagtttatctattaatataagtacttgtgagactatttga 24417712  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 34536285 - 34536249
Alignment:
Q  181 tatctattcacataaatacttgtgagactgtttgaga 217  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  34536285 tatctattgacataaacacttgtgagactgtttgaga 34536249  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 214
Target Start/End: Complemental strand, 8427162 - 8427107
Alignment:
Q  159 tttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttg 214  Q
    |||||| ||||||| ||||| ||||||| | |||||| ||||||||||||||||||    
T  8427162 tttggattgatttatttgagcttatctactaacataagtacttgtgagactgtttg 8427107  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 25670518 - 25670567
Alignment:
Q  170 ttacttgagtttatctattcacataaatacttgtgagactgtttgagaaa 219  Q
    ||||||||| ||||||||| ||||||   |||||||||||||||||||||    
T  25670518 ttacttgagcttatctattgacataagctcttgtgagactgtttgagaaa 25670567  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 40335791 - 40335849
Alignment:
Q  156 ctgtttggactgatttacttgagtttatctattcacataaatacttgtgagactgtttg 214  Q
    ||||||||| ||| ||| ||||||||||||| || || ||| |||||||||||||||||    
T  40335791 ctgtttggattgacttatttgagtttatctactcgcacaaacacttgtgagactgtttg 40335849  T

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