View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7284_high_12 (Length: 338)
Name: NF7284_high_12
Description: NF7284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7284_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 7 - 320
Target Start/End: Complemental strand, 2789420 - 2789107
Alignment:
| Q |
7 |
aatatcacatccatcagcgccattttgctttgctttctcacactcattcaagaatgtattgaatgcatcctcgacatatttaactgcgtccaaaacacac |
106 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2789420 |
aatatcacatccatcagctccattttgctttgctttctcacactcattcaagaatgtattgaatgcaacctcgacatatttaactgcgtccaaaacacac |
2789321 |
T |
|
| Q |
107 |
atgttctcgatcaacttgttgggatatatactctttctatgatccccattaagagtagctgccattagtaccaattcttcctgaaattcactcaacttgg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2789320 |
atgttctcgatcaacttgttgggatatatactctttctatgatccccattaagagtagctgccattagtaccaattcttcctgaaattcactcaacttgg |
2789221 |
T |
|
| Q |
207 |
cttcttctttagcagcagcctctcgcagcttaatcggttcgggcagtttttctgcacaatgaatacttaaatagtcaagaaacacgattgatggtcaaat |
306 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2789220 |
cttcttctttagcagcggcctctcgcagcttaatcggttcgggcagtttttctgcacaatgaatacttaaatagtcaagaaacacgattgatggtcgaat |
2789121 |
T |
|
| Q |
307 |
ttgttattcatgta |
320 |
Q |
| |
|
|||||||||||||| |
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|
| T |
2789120 |
ttgttattcatgta |
2789107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 7 - 316
Target Start/End: Complemental strand, 2830674 - 2830365
Alignment:
| Q |
7 |
aatatcacatccatcagcgccattttgctttgctttctcacactcattcaagaatgtattgaatgcatcctcgacatatttaactgcgtccaaaacacac |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
2830674 |
aatatcacatccatcagctccattttgcttggctttctcacactcattcaaaaatgtattgaatgcatcctcggcatatttaactgcgtccgaaacacac |
2830575 |
T |
|
| Q |
107 |
atgttctcgatcaacttgttgggatatatactctttctatgatccccattaagagtagctgccattagtaccaattcttcctgaaattcactcaacttgg |
206 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2830574 |
atgttctcgatcaacttgtcaggatatatactctttttatgatccccattaagagtagctgccattagtaccaattcttcctgaaattcactcaacttgg |
2830475 |
T |
|
| Q |
207 |
cttcttctttagcagcagcctctcgcagcttaatcggttcgggcagtttttctgcacaatgaatacttaaatagtcaagaaacacgattgatggtcaaat |
306 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
2830474 |
cttcttctttagcagcagcctctcgcagcttaatcggttcgggcagtttttctgcacaatgaacacttaaatagtcaagaaacacgattgatggtcgaat |
2830375 |
T |
|
| Q |
307 |
ttgttattca |
316 |
Q |
| |
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|||||||||| |
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|
| T |
2830374 |
ttgttattca |
2830365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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