View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7284_high_13 (Length: 321)
Name: NF7284_high_13
Description: NF7284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7284_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 37376278 - 37376565
Alignment:
| Q |
1 |
taagttgaatctagaagagaaaaggacacaggtatattgataaatagcataactgagttactctcttatatctttccatgcaatcatgtgttttgcaatg |
100 |
Q |
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| T |
37376278 |
taagttgaatctagaagagaaaaggacacaggtatattgataaatagcataactgagttactctcttatatctttccatgcaatcatgtgttttgcaatg |
37376377 |
T |
|
| Q |
101 |
catgcattatgatagactattcggtgaattcattattatatcacagatgactctgtgggcttttgcaaaatctcctcttatgtatggaggcgatgtgcgg |
200 |
Q |
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| T |
37376378 |
catgcattatgatagactattcagtgaattcattattatatcacagatgactctgtgggcttttgcaaaatctcctcttatgtatggaggcgatgtgcgg |
37376477 |
T |
|
| Q |
201 |
aggatcgatcctgccacatatgaaattatgacgaatccgaccctactagagattaatcatttcagctccaataatatagaggcatgtg |
288 |
Q |
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| T |
37376478 |
aggatcgatcctgccacatatgaaattatgacgaatccgaccctactagagattaatcatttcagctccaataatatagaggcatgtg |
37376565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 37383643 - 37383923
Alignment:
| Q |
1 |
taagttgaatctagaagagaaaaggacacaggtatattgataaatagcataactgagttactctcttatatctttccatgcaatcatgtgttttgcaatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||| ||||| || ||| |||| |||| |||| |
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| T |
37383643 |
taagttgaatctagaagagaaaaggacacaggtattttgataaatagcataacttggttactctcgtatat-tttcc-tgtaatggtgtg-tttggaatg |
37383739 |
T |
|
| Q |
101 |
catgcattatgatagactattcggtgaattcattattatatcacagatgactctgtgggcttttgcaaaatctcctcttatgtatggaggcgatgtgcgg |
200 |
Q |
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| T |
37383740 |
catgcattatgatagactcttgagtgaattcattattatatcacagatgactctgtgggctttggcaaaatctccccttatgtatggaggcgatgtgcgg |
37383839 |
T |
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| Q |
201 |
aggatcgatcctgccacatatgaaattatgacgaatccgaccctactagagattaatcatttcagctccaataatatagaggca |
284 |
Q |
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| T |
37383840 |
agaatcgatccggccacatatgaaattatcacgaatccaaccctactagagattaatcatttcagctccaataatatagaggca |
37383923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 286
Target Start/End: Original strand, 37361466 - 37361731
Alignment:
| Q |
11 |
ctagaagagaaaaggacacaggtatattgataaatagcataactgagttactctcttatatctttccatgcaatcatgtgttttgcaatgcatgcattat |
110 |
Q |
| |
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| T |
37361466 |
ctagaagagcaaaggacacaggtat--tgatgaatagtacaactgagttactttcttatatatttttatgcaattatgtgctt------gcatgcattat |
37361557 |
T |
|
| Q |
111 |
gatagactattcgg-tgaattcattattatatcacagatgactctgtgggcttttgcaaaatctcctcttatgtatggaggcgatgtgcggaggatcgat |
209 |
Q |
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|||| ||||| | | |||| |||||||| |||||||||||| |||||||| | ||||| ||||| ||||||||||||||||||||| ||| |||||| |
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| T |
37361558 |
gata---tattctgatcaatttattattatctcacagatgactttgtgggctatggcaaagtctccccttatgtatggaggcgatgtgaggaagatcgac |
37361654 |
T |
|
| Q |
210 |
cctgccacatatgaaattatgacgaatccgaccctactagagattaatcatttcagctccaataatatagaggcatg |
286 |
Q |
| |
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|||||||||||||||||| |||||||| ||| |||| |||||||||||||||||||| ||||||| |||||||| |
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| T |
37361655 |
aatgccacatatgaaattatcacgaatcctaccttacttgagattaatcatttcagctcaaataataaggaggcatg |
37361731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 286
Target Start/End: Complemental strand, 37366595 - 37366330
Alignment:
| Q |
11 |
ctagaagagaaaaggacacaggtatattgataaatagcataactgagttactctcttatatctttccatgcaatcatgtgttttgcaatgcatgcattat |
110 |
Q |
| |
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||||||||| ||||||||||||||| |||| ||||| | |||||||||||| |||||||| ||| ||||||| ||||| || ||||||||||| |
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| T |
37366595 |
ctagaagagcaaaggacacaggtat--tgatgaatagtacaactgagttactttcttatatatttttatgcaattatgtgctt------gcatgcattat |
37366504 |
T |
|
| Q |
111 |
gatagactattcgg-tgaattcattattatatcacagatgactctgtgggcttttgcaaaatctcctcttatgtatggaggcgatgtgcggaggatcgat |
209 |
Q |
| |
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|||| ||||| | | |||| |||||||| |||||||||||| |||||||| | ||||| ||||| ||||||||||||||||||||| ||| |||||| |
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| T |
37366503 |
gata---tattctgatcaatttattattatctcacagatgactttgtgggctatggcaaagtctccccttatgtatggaggcgatgtgaggaagatcgac |
37366407 |
T |
|
| Q |
210 |
cctgccacatatgaaattatgacgaatccgaccctactagagattaatcatttcagctccaataatatagaggcatg |
286 |
Q |
| |
|
|||||||||||||||||| |||||||| ||| |||| |||||||||||||||||||| ||||||| |||||||| |
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| T |
37366406 |
aatgccacatatgaaattatcacgaatcctaccttacttgagattaatcatttcagctcaaataataaggaggcatg |
37366330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 99 - 288
Target Start/End: Complemental strand, 37408871 - 37408683
Alignment:
| Q |
99 |
tgcatgcattatgatagactattcggtgaattcattattatatcacagatgactctgtgggcttttgcaaaatctcctcttatgtatggaggcgatgtgc |
198 |
Q |
| |
|
|||||||||||||||||||| | | || ||||||| |||| ||| |||||||| | |||||||| ||||| ||||| |||||||||||||||||| ||| |
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| T |
37408871 |
tgcatgcattatgatagactctgag-tggattcattgttatctcatagatgactttatgggctttggcaaagtctccccttatgtatggaggcgatatgc |
37408773 |
T |
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| Q |
199 |
ggaggatcgatcctgccacatatgaaattatgacgaatccgaccctactagagattaatcatttcagctccaataatatagaggcatgtg |
288 |
Q |
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||| |||||| ||||||||||| |||||||| |||||||| || | | |||||||||| ||||| ||| ||||||||||||||||||| |
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| T |
37408772 |
ggaagatcgaccctgccacatacgaaattatcacgaatcctacagtgccagagattaattttttcaactcaaataatatagaggcatgtg |
37408683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 99 - 274
Target Start/End: Complemental strand, 41228785 - 41228611
Alignment:
| Q |
99 |
tgcatgcattatgatagactattcggtgaattcattattatatcacagatgactctgtgggcttttgcaaaatctcctcttatgtatggaggcgatgtgc |
198 |
Q |
| |
|
|||||||||||||||||| | || ||||||||||| |||| ||| |||||||| | |||||| | ||||| ||||| |||||||||||||| || ||| |
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| T |
41228785 |
tgcatgcattatgatagatt-ttgagtgaattcattgttatctcatagatgactttatgggctctggcaaagtctccccttatgtatggaggtgacatgc |
41228687 |
T |
|
| Q |
199 |
ggaggatcgatcctgccacatatgaaattatgacgaatccgaccctactagagattaatcatttcagctccaataa |
274 |
Q |
| |
|
||| |||||| |||||||||||||||||||| || ||||| ||| | ||||| |||||| |||||||||| ||||| |
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| T |
41228686 |
ggaagatcgaccctgccacatatgaaattatcacaaatcctaccgtgctagaaattaattatttcagctctaataa |
41228611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 288
Target Start/End: Original strand, 39246281 - 39246427
Alignment:
| Q |
142 |
cacagatgactctgtgggcttttgcaaaatctcctcttatgtatggaggcgatgtgcggaggatcgatcctgccacatatgaaattatgacgaatccgac |
241 |
Q |
| |
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|||||||||| |||||||| | ||||| ||||| ||||||||||| |||||||| |||| ||| ||||| | ||||| || | || || ||||| || |
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| T |
39246281 |
cacagatgaccctgtgggcaatggcaaagtctccccttatgtatgggggcgatgtacggaagattgatcccacaacatacgatctcatcacaaatcccac |
39246380 |
T |
|
| Q |
242 |
cctactagagattaatcatttcagctccaataatatagaggcatgtg |
288 |
Q |
| |
|
||| || ||||||||| ||| ||||| |||||||| |||||||||| |
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| T |
39246381 |
ccttctggagattaatttttttagctcaaataatatggaggcatgtg |
39246427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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