View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7284_high_3 (Length: 708)
Name: NF7284_high_3
Description: NF7284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7284_high_3 |
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| [»] scaffold0197 (2 HSPs) |
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Alignment Details
Target: scaffold0197 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 133 - 691
Target Start/End: Complemental strand, 5893 - 5334
Alignment:
| Q |
133 |
ttgaagtatgtcatctgaggttcgatctctcacaaatatgtatggaagaacannnnnnnattgaaaaatcaatcgtcgacctcttaaaacggatcatatt |
232 |
Q |
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||||||||||||||||||||||| |||||| | ||||||||||||||||||| |||||||| |||| ||||||||||||||||||||| || |
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| T |
5893 |
ttgaagtatgtcatctgaggttccatctctgataaatatgtatggaagaacatttttttattgaaaa-tcaactgtcgacctcttaaaacggatccg-tt |
5796 |
T |
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| Q |
233 |
attttgagagattggtccatactctt---gactaggaaaaccttgggttcactattaaaatgaaatcatcatgaaatgactgacttgttcaatctttgca |
329 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5795 |
attttgagagattggtccatactcttcttgactagaaaaaccttgggtttactattaaaatgaaatcatcatgaaatgacttacttgttcaatctttgca |
5696 |
T |
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| Q |
330 |
attggttcttacacaattgaaccaacatacttacttagttgattannnnnnnnnnnncatcaaacattggtttgttgaaggtctaaacagatgcagaaag |
429 |
Q |
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| T |
5695 |
attggttcttacacaattgaaccaacatacttacttagttgattatttttcttttttcatcaaacattggtttgttgaaggtctaaacagatgcagaaag |
5596 |
T |
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| Q |
430 |
agttgtaggctaagatggttgaactatctacgtcctaacataaagagaggaaattttgctgaggaggaagtggaaatgattgtcaaactccacaaattat |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5595 |
agttgtaggctaagatggttgaactatctacgtcctaacataaagagaggaaattttgctgaggaggaagtggaaatgattgtcaaactccacaaattat |
5496 |
T |
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| Q |
530 |
taggcaacaggtaaactttgatctttaagactttcctttggtattttctaatgtgttctaagttctaacaactaggcatgggccatgatagccttatgca |
629 |
Q |
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| T |
5495 |
taggcaacaggtaaactttgatctttaagactttcctttggtattttctaatgtgttctaagttctaacaactaggcatgggccatgatagccttatgca |
5396 |
T |
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| Q |
630 |
gtttttccaaaggtgttaaagctcattagtgaagagtgtgcatagtaaaaagttagtgttca |
691 |
Q |
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| T |
5395 |
gtttttccaaaggtgttaaagctcattagtgaagagtgtgcatagtaaaaagttagtgttca |
5334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 314
Target Start/End: Complemental strand, 6196 - 5895
Alignment:
| Q |
13 |
aatatggtgaaggaaagtggcatagggttccactattggctggtaaaagttaatcaattatttttcctttttcttgatatttctatttgtcttctctaaa |
112 |
Q |
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| T |
6196 |
aatatggtgaaggaaagtggcatagggttccactattggctggtaaaagttaatcaattatttttcctttttcttgatatttctatttgtcttctctaaa |
6097 |
T |
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| Q |
113 |
acggatatttaattacttctttgaagtatgtcatctgaggttcgatctctcacaaatatgtatggaagaacannnnnnnattgaaaaatcaatcgtcgac |
212 |
Q |
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| T |
6096 |
acggatatttaattacttctttgaagtatgtcatctgaggttcgatctctcacaaatatgtatggaagaacatttttttattgaaaaatcaattgtcgac |
5997 |
T |
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| Q |
213 |
ctcttaaaacggatcatattattttgagagattggtccatactcttgactaggaaaaccttgggttcactattaaaatgaaatcatcatgaaatgactga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5996 |
ctcttaaaacggatcatattattttgagagattggtccatgctcttgactaggaaaaccttgggttcactattaaaatgaaatcatcatgaaatgaccga |
5897 |
T |
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| Q |
313 |
ct |
314 |
Q |
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|| |
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| T |
5896 |
ct |
5895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 458
Target Start/End: Original strand, 41544284 - 41544317
Alignment:
| Q |
425 |
gaaagagttgtaggctaagatggttgaactatct |
458 |
Q |
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| T |
41544284 |
gaaagagttgcaggctaagatggttgaactatct |
41544317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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