View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7284_high_6 (Length: 419)
Name: NF7284_high_6
Description: NF7284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7284_high_6 |
 | |
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| [»] scaffold0090 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 1046480 - 1046882
Alignment:
| Q |
1 |
cacccaatttcaatctcttgatgatggcaacaccttggtttctaatgatggaacctttgagttaggctttttcacaccaggtagttcaacaaatcgctat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1046480 |
cacccaatttcaatctcttgatgatggcaacaccttggtttctaatgacggaacctttgagttaggctttttcacaccaggtagttcaacaaatcgctat |
1046579 |
T |
|
| Q |
101 |
gtgggaatatggtacaaaaatatcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaatcgaagacaacaattccaactcaaccatgttga |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
1046580 |
gtgggaatatggtacaaaaacatcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaatcaaagacaacaattccaactcaaccatgttga |
1046679 |
T |
|
| Q |
201 |
tcataagcaatgaaggaaacctagtactactttccaacaacaaccaaacacttgtttggtcaacaaacatcacaacccgatctttatcaactacaagttc |
300 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
1046680 |
tcataagcaacgaaggaaacctagtactactttccaacaacaaccaaacacttgtttggtcaacaaacatcacaacccgatctttgtcaactacaagttc |
1046779 |
T |
|
| Q |
301 |
ttatgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaatgattttctatggcaaggttttgatttt |
400 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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|
| T |
1046780 |
tcatgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaataatttcttatggcaaggttttgatttt |
1046879 |
T |
|
| Q |
401 |
cct |
403 |
Q |
| |
|
||| |
|
|
| T |
1046880 |
cct |
1046882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 1071293 - 1071695
Alignment:
| Q |
1 |
cacccaatttcaatctcttgatgatggcaacaccttggtttctaatgatggaacctttgagttaggctttttcacaccaggtagttcaacaaatcgctat |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1071293 |
cacccaatttcaatctcttaatgatggcaacactttggtttctaatgatggaacctttgagttaggctttttcacaccaggtagttcaacaaatcgctat |
1071392 |
T |
|
| Q |
101 |
gtgggaatatggtacaaaaatatcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaatcgaagacaacaattccaactcaaccatgttga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||| ||||||||||||||||||| |
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|
| T |
1071393 |
gtgggaatatggtacaaaaatatcccaaaaagaagaatagtttgggttgcaaaccgtgatgatccaatcaaggacaacaactccaactcaaccatgttga |
1071492 |
T |
|
| Q |
201 |
tcataagcaatgaaggaaacctagtactactttccaacaacaaccaaacacttgtttggtcaacaaacatcacaacccgatctttatcaactacaagttc |
300 |
Q |
| |
|
|||| ||||| || |||||||| | ||||||| |||||||||| |||||||||||||||||||||||||||||||| | |||||| |||||||||||||| |
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|
| T |
1071493 |
tcatgagcaaagagggaaaccttgaactacttaccaacaacaatcaaacacttgtttggtcaacaaacatcacaacacaatctttgtcaactacaagttc |
1071592 |
T |
|
| Q |
301 |
ttatgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaatgattttctatggcaaggttttgatttt |
400 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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|
| T |
1071593 |
tcatgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaataatttcttatggcaaggttttgatttt |
1071692 |
T |
|
| Q |
401 |
cct |
403 |
Q |
| |
|
||| |
|
|
| T |
1071693 |
cct |
1071695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 2 - 403
Target Start/End: Original strand, 1103511 - 1103912
Alignment:
| Q |
2 |
acccaatttcaatctcttgatgatggcaacaccttggtttctaatgatggaacctttgagttaggctttttcacaccaggtagttcaacaaatcgctatg |
101 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1103511 |
acccaattccaatctcttgatgatggtaacactttggtttctaatgatggaacctttgagttaggctttttcacaccaggtagttcaacaaatcgctacg |
1103610 |
T |
|
| Q |
102 |
tgggaatatggtacaaaaatatcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaatcgaagacaacaattccaactcaaccatgttgat |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
1103611 |
tgggaatatggtacaaaaatatcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaatcaaagacaacacctccaactcaaccatgttgat |
1103710 |
T |
|
| Q |
202 |
cataagcaatgaaggaaacctagtactactttccaacaacaaccaaacacttgtttggtcaacaaacatcacaacccgatctttatcaactacaagttct |
301 |
Q |
| |
|
||| |||||||| |||||||| | | ||||| |||||||||| |||||||||||||||||||||||||||||||| | |||||| ||||||||||||||| |
|
|
| T |
1103711 |
catgagcaatgatggaaaccttgaaatacttaccaacaacaatcaaacacttgtttggtcaacaaacatcacaacacaatctttgtcaactacaagttct |
1103810 |
T |
|
| Q |
302 |
tatgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaatgattttctatggcaaggttttgattttc |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
1103811 |
catgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaataatttcttatggcaaggttttgattttc |
1103910 |
T |
|
| Q |
402 |
ct |
403 |
Q |
| |
|
|| |
|
|
| T |
1103911 |
ct |
1103912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 1086957 - 1087356
Alignment:
| Q |
1 |
cacccaatttcaatctcttgatgatggcaacaccttggtttctaatgatggaacctttgagttaggctttttcacaccaggtagttcaacaaatcgctat |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
1086957 |
cacccaatttcaatctcttcatgatggcaacactttggtttctaatgatggaacctttgagttaggatttttcacaccaggtagttccacaaatcgctat |
1087056 |
T |
|
| Q |
101 |
gtgggaatatggtacaaaaatatcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaatcgaagacaacaattccaactcaaccatgttga |
200 |
Q |
| |
|
||||||||||||||||||||||| || || ||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
1087057 |
gtgggaatatggtacaaaaatatgcctaa---tagaatagtttgggttgcaaaccgtgatgatccaatcaaagacaacacctccaactcaaccatgttga |
1087153 |
T |
|
| Q |
201 |
tcataagcaatgaaggaaacctagtactactttccaacaacaaccaaacacttgtttggtcaacaaacatcacaacccgatctttatcaactacaagttc |
300 |
Q |
| |
|
|||| |||||||| |||||||| | | ||||| |||||||||| |||||||||||||||||||||||||||||||| | |||||| |||||||||||||| |
|
|
| T |
1087154 |
tcatgagcaatgatggaaaccttgaaatacttaccaacaacaatcaaacacttgtttggtcaacaaacatcacaacacaatctttgtcaactacaagttc |
1087253 |
T |
|
| Q |
301 |
ttatgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaatgattttctatggcaaggttttgatttt |
400 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
1087254 |
tcatgttgctcaactattagacaatggaaactttgtaatcaaagccaacaacaatactgatcaacaaagtaataatttcttatggcaaggttttgatttt |
1087353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 176
Target Start/End: Complemental strand, 10607 - 10453
Alignment:
| Q |
22 |
tgatggcaacaccttggtttctaatgatggaacctttgagttaggctttttcacaccaggtagttcaacaaatcgctatgtgggaatatggtacaaaaat |
121 |
Q |
| |
|
|||||| | ||||||||||||||| | |||| ||||||||||| || |||| ||||||||||| || || |||||||| ||||| |||||||||||| |
|
|
| T |
10607 |
tgatggaagcaccttggtttctaagggtggagtatttgagttaggtttcttcaatccaggtagttccacgaaccgctatgttggaatttggtacaaaaat |
10508 |
T |
|
| Q |
122 |
atcccaaaaagaagaatagtttgggttgcaaaccgtgataatccaatcgaagaca |
176 |
Q |
| |
|
||||| |||||| | ||||||||||| || ||||| ||||||||| |||||| |
|
|
| T |
10507 |
atcccggttagaagagttgtttgggttgccaatcgtgacaatccaatcaaagaca |
10453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 39 - 175
Target Start/End: Complemental strand, 22692462 - 22692326
Alignment:
| Q |
39 |
tttctaatgatggaacctttgagttaggctttttcacaccaggtagttcaacaaatcgctatgtgggaatatggtacaaaaatatcccaaaaagaagaat |
138 |
Q |
| |
|
||||||| ||||||| ||||||||| || ||||||| |||||||||||| |||| |||||||| ||| | |||||||||||||| ||| |||||| | |
|
|
| T |
22692462 |
tttctaaagatggaagctttgagttgggttttttcagtccaggtagttcatcaaaccgctatgtcggactttggtacaaaaatattccagttagaagagt |
22692363 |
T |
|
| Q |
139 |
agtttgggttgcaaaccgtgataatccaatcgaagac |
175 |
Q |
| |
|
||||||||| |||||||||||||| ||| ||||| |
|
|
| T |
22692362 |
ggtttgggttctcaaccgtgataatccgatcaaagac |
22692326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 28426034 - 28426138
Alignment:
| Q |
22 |
tgatggcaacaccttggtttctaatgatggaacctttgagttaggctttttcacaccaggtagttcaacaaatcgctatgtgggaatatggtacaaaaat |
121 |
Q |
| |
|
|||||||| ||| ||||| ||||| ||||||||||||||| | || || |||| ||| |||| || ||| |||||||| |||||||||||||||||| |
|
|
| T |
28426034 |
tgatggcagcactttggtctctaaggatggaacctttgagatgggtttcttcagacccggtaagtccttaaaccgctatgtaggaatatggtacaaaaat |
28426133 |
T |
|
| Q |
122 |
atccc |
126 |
Q |
| |
|
||||| |
|
|
| T |
28426134 |
atccc |
28426138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 28417503 - 28417605
Alignment:
| Q |
24 |
atggcaacaccttggtttctaatgatggaacctttgagttaggctttttcacaccaggtagttcaacaaatcgctatgtgggaatatggtacaaaaatat |
123 |
Q |
| |
|
|||||| ||| ||||| ||||| ||||||||||||||| | || || |||| ||| |||| || ||| |||||||| |||||||||||||||||||| |
|
|
| T |
28417503 |
atggcagcactttggtctctaaggatggaacctttgagatgggtttcttcagacccggtaagtccttaaaccgctatgtaggaatatggtacaaaaatat |
28417602 |
T |
|
| Q |
124 |
ccc |
126 |
Q |
| |
|
||| |
|
|
| T |
28417603 |
ccc |
28417605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 23551608 - 23551703
Alignment:
| Q |
31 |
caccttggtttctaatgatggaacctttgagttaggctttttcacaccaggtagttcaacaaatcgctatgtgggaatatggtacaaaaatatccc |
126 |
Q |
| |
|
||||||| |||| || ||||||||||| || ||||| || |||| ||||||| ||| |||| |||||||| ||||| ||||||||||| ||||| |
|
|
| T |
23551608 |
caccttgatttccaaagatggaaccttcgaattaggtttcttcagtccaggtaattccccaaaccgctatgtcggaatttggtacaaaaacatccc |
23551703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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