View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7284_high_8 (Length: 405)
Name: NF7284_high_8
Description: NF7284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7284_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 28973091 - 28973491
Alignment:
| Q |
1 |
ttttatttatgtagctgaccccatctacttggacaagacaatgtttttgctgtcaacatgttgtactagcactattattaattaatacactgcccaatcc |
100 |
Q |
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| T |
28973091 |
ttttatttatgtagctgaccccatctacttggacaagacaatgtttttgctgtcaacatgttgtactagcactattattaattaatacactgcccaatcc |
28973190 |
T |
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| Q |
101 |
atggtccatgtttatttaagattataatattactgaagttgtggtttttgctggatttcttactttagtgatctggaatctggatggcactgattgattt |
200 |
Q |
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| T |
28973191 |
atggtccatgtttatttaagattataatattactgaagttgtggtttttgctggatttctttctttagtgatctggaatctggatggcactgattgattt |
28973290 |
T |
|
| Q |
201 |
tagatatagacttggata-nnnnnnnnnnnnnnnnnnngtcctgagctcatgagtggtgaatgatcaagttgagcgtttgttagttataaggaattacta |
299 |
Q |
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| T |
28973291 |
tagctatagacttggatatttttattttttatttttttgtcctgagctcatgagtggtgaatgatcaagttgagtgtttgttagttataaggaattacta |
28973390 |
T |
|
| Q |
300 |
gcattttaattggaaaagacaaaatgttgtcaaatagtggccatagcgccgcaatagctgttatttgaacaagccgctattgacaacttaccctggactc |
399 |
Q |
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| T |
28973391 |
gcattttaattggaaaagacaaaatgttgtcaaatagtggccatagcgccgcaatagctgttatttgaacaagccgctattgacaacttaccctggactc |
28973490 |
T |
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| Q |
400 |
t |
400 |
Q |
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| T |
28973491 |
t |
28973491 |
T |
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