View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7284_low_10 (Length: 397)
Name: NF7284_low_10
Description: NF7284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7284_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 38022528 - 38022150
Alignment:
| Q |
18 |
agaacaatcaagaacattgtcaacaaccattgttgtgtcgtagcacgactttgagccgcctctttctgatattgtacgatgtaaattgtttgacatttga |
117 |
Q |
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| T |
38022528 |
agaacaatcaagaacattgtcaacaaccattgttgtgtcgtagcacgactttgagccgcctctttctgatcttgtacgatgtaaattgttcgacctttga |
38022429 |
T |
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| Q |
118 |
aataagtcatcaatagttatggtccgatgcnnnnnnncactaatcaaatcatannnnnnnaataggtttgggtgatcgggattaaagtccaataaatttg |
217 |
Q |
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| T |
38022428 |
aataagtcatcaatagttatggtccgatgcaaaaaaacactaatcaattcatatttttt-aataggtttgggtgatcgggattaaagtccaataaatttg |
38022330 |
T |
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| Q |
218 |
aagggtttttgag------------accgtagaacaatcatcattgaatagtccaaatttcatagacaaatagtaaattgacaatgatattaaatcaacg |
305 |
Q |
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||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38022329 |
aagggtttttgagctgactgaggggatcgtagaacaatcaccattgaatagtccaaatttcatagacaaatagtaaattgacaatgatattaaatcaacg |
38022230 |
T |
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| Q |
306 |
tgaataaataaattatttgaatgatattttatgatttggaaaacaaaacttatgaattcgcaaaaataataacctatttt |
385 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38022229 |
tgaataaataaattatttgaatgataatttatggtttggaaaacaaaacttatgaattcgcaaaaataataacctatttt |
38022150 |
T |
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