View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7284_low_11 (Length: 396)
Name: NF7284_low_11
Description: NF7284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7284_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 13 - 379
Target Start/End: Complemental strand, 15237096 - 15236730
Alignment:
| Q |
13 |
tcatcaatagcaccaaacataacctcttcagcttctttccttgcttcagccatacatggattaggtgggaccctcattattgctggtggcaaatatgtct |
112 |
Q |
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| T |
15237096 |
tcatcaatagcaccaaacataacctcttcagcttctttccttgcttcagccatacatggattaggtgggaccctcattattgctggtggcaaatatgtct |
15236997 |
T |
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| Q |
113 |
tttgccctaaacctgacctctcaagtatcttcttttgaaaagaaagagtttcttctgtaaatgcttttgttaaaattgatctttctacaaaaatctctct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15236996 |
tttgccctaaacctgacctctcaagtatcttcttttgaaaagaaagagtttcttctgtaaatgcttttgttaaaattgatctttctacaaaaatctctct |
15236897 |
T |
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| Q |
213 |
tgtgacttgcaaatctttttgtggtttgtagcatgcaaaatcaaccaagtatatgcctcttggacgagacatgaaataaagggttgcaagaaatactact |
312 |
Q |
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| T |
15236896 |
tgtgacttgcaaatctttttgtggtttgtagcatgcaaaatcaaccaagtatatgcctcttggacgagacatgaaataaagggttgcaagaaatactact |
15236797 |
T |
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| Q |
313 |
agacttgtacatataagcattgacacaaagttgaatttgagattttcatatatttggattaaatctt |
379 |
Q |
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| T |
15236796 |
agacttgtacatataagcattgacacaaagttgaatttgagattttcatatatttggattaaatctt |
15236730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 13 - 154
Target Start/End: Complemental strand, 34051925 - 34051784
Alignment:
| Q |
13 |
tcatcaatagcaccaaacataacctcttcagcttctttccttgcttcagccatacatggattaggtgggaccctcattattgctggtggcaaatatgtct |
112 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||| || |||| ||||||||| |||||||| |||| |
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| T |
34051925 |
tcatcaatagcaccaaacataacttcctcagcttctttccttgcttcagccatacaaggatttggtggaacactcaatattgctgggggcaaataagtct |
34051826 |
T |
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| Q |
113 |
tttgccctaaacctgacctctcaagtatcttcttttgaaaag |
154 |
Q |
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|||| |||||||| |||||||||||||| ||||||||||||| |
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| T |
34051825 |
tttgacctaaaccagacctctcaagtattttcttttgaaaag |
34051784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 362
Target Start/End: Complemental strand, 34051704 - 34051576
Alignment:
| Q |
234 |
tggtttgtagcatgcaaaatcaaccaagtatatgcctcttggacgagacatgaaataaagggttgcaagaaatactactagacttgtacatataagcatt |
333 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||||| |||||| ||||| || |||||||||| | ||||| ||||||| | | |
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| T |
34051704 |
tggtttgtaacatgcaaaatcaaccaagtatacacctcttggacgactcatgaagtaaagtgtcacaagaaataccataagactagtacatagtgttact |
34051605 |
T |
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| Q |
334 |
gacacaaagttgaatttgagattttcata |
362 |
Q |
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|| |||| |||||||||||||||||||| |
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| T |
34051604 |
gatacaagattgaatttgagattttcata |
34051576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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