View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7284_low_13 (Length: 343)

Name: NF7284_low_13
Description: NF7284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7284_low_13
NF7284_low_13
[»] chr6 (19 HSPs)
chr6 (18-331)||(5261647-5261960)
chr6 (18-331)||(5285644-5285940)
chr6 (22-328)||(5445271-5445577)
chr6 (22-266)||(5075236-5075480)
chr6 (30-296)||(5183465-5183731)
chr6 (117-253)||(5356216-5356352)
chr6 (22-261)||(5068579-5068818)
chr6 (9-89)||(5148451-5148531)
chr6 (22-261)||(5424011-5424250)
chr6 (22-86)||(5368893-5368957)
chr6 (191-261)||(5104546-5104616)
chr6 (207-296)||(5395266-5395355)
chr6 (22-86)||(5094474-5094538)
chr6 (202-261)||(5159186-5159245)
chr6 (202-260)||(5094300-5094358)
chr6 (30-86)||(5104385-5104441)
chr6 (22-89)||(5133410-5133477)
chr6 (205-280)||(5148647-5148722)
chr6 (30-89)||(5348805-5348864)
[»] chr2 (1 HSPs)
chr2 (18-331)||(22585822-22586135)
[»] chr4 (8 HSPs)
chr4 (22-266)||(4333805-4334049)
chr4 (22-293)||(4358636-4358907)
chr4 (22-179)||(4125942-4126099)
chr4 (112-296)||(25568215-25568399)
chr4 (30-292)||(4322615-4322877)
chr4 (30-166)||(4343294-4343430)
chr4 (112-161)||(4351587-4351636)
chr4 (41-85)||(6714223-6714267)
[»] chr7 (1 HSPs)
chr7 (218-266)||(36215593-36215641)


Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 5261647 - 5261960
Alignment:
Q  18 aaatcatcataacttattcttaacttcttctgcacttgatcatgaggaattattttgagtttctccaatacaagatcccacttatattttgccttatcaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||| |||| | ||||||||    
T  5261647 aaatcatcataacttattcttaacttcttctgcacttgatcattaggaattcttttgagtttctccaatacaagaacccacttagatttcgtcttatcaa 5261746  T
Q  118 acaaataagacccaaggacttcgagagctagcagcaatcctccacaatattcaactgcattttcggcaactctaataaaatctcttgtaggactcgcttc 217  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| || || || ||||||||||||||||||||||||||     
T  5261747 acaaataagacccaaggacttcgagagctagcggcaatcctccacaatattcaactacatttttggtaaatccaataaaatctcttgtaggactcgcttt 5261846  T
Q  218 cttgaatgcattctaactaaaaagctcaattgattctctttcattcattgttgtcattttgtaaattttatcaactctacctgaaagtaaatccaaatct 317  Q
    ||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||| ||||| |||||||| ||||||| |||||||| ||||    
T  5261847 cttgaatgcattccaactaaaaagctcaattgattcattttcattcattgttgtcattttgtatattttgtcaactctccctgaaattaaatccagatct 5261946  T
Q  318 ctagttgtgatgat 331  Q
    ||||||||||||||    
T  5261947 ctagttgtgatgat 5261960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 5285644 - 5285940
Alignment:
Q  18 aaatcatcataacttattcttaacttcttctgcacttgatcatgaggaattattttgagtttctccaatacaagatcccacttatattttgccttatcaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5285644 aaatcatcataacttattcttaacttcttctgcacttgattgtgaggaattattttgagtttctccaatacaagatcccacttatattttgccttatcaa 5285743  T
Q  118 acaaataagacccaaggacttcgagagctagcagcaatcctccacaatattcaactgcattttcggcaactctaataaaatctcttgtaggactcgcttc 217  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||     
T  5285744 acaaataagacccaaggacttcgagagctagcggcaatcctccacaatattcaactacattttcggtaactctaataaaatctcttgtaggactcactt- 5285842  T
Q  218 cttgaatgcattctaactaaaaagctcaattgattctctttcattcattgttgtcattttgtaaattttatcaactctacctgaaagtaaatccaaatct 317  Q
                    |||||||||||||||||||| ||||||||||| |||||||| ||||| ||||| |||||||| |||||||||||||||||||||    
T  5285843 ----------------ctaaaaagctcaattgattcactttcattcatcgttgtcatattgtatattttgtcaactctccctgaaagtaaatccaaatct 5285926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 22 - 328
Target Start/End: Complemental strand, 5445577 - 5445271
Alignment:
Q  22 catcataacttattcttaacttcttctgcacttgatcatgaggaattattttgagtttctccaatacaagatcccacttatattttgccttatcaaacaa 121  Q
    |||||||||| || ||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||| |||||||   |||  | ||||| ||||||    
T  5445577 catcataactcatccttaacttcttctgcacttgatcataaggaattcttttgagtgtctccaatacaagttcccactctgattccgtcttattaaacaa 5445478  T
Q  122 ataagacccaaggacttcgagagctagcagcaatcctccacaatattcaactgcattttcggcaactctaataaaatctcttgtaggactcgcttccttg 221  Q
    |||||||||||||||||| ||||||||| |||||||  || ||||||||||| |||||| || || ||||| ||||||| ||||||||| ||||  ||||    
T  5445477 ataagacccaaggacttcaagagctagcggcaatccctcagaatattcaactacatttttggaaattctaacaaaatcttttgtaggacacgctcgcttg 5445378  T
Q  222 aatgcattctaactaaaaagctcaattgattctctttcattcattgttgtcattttgtaaattttatcaactctacctgaaagtaaatccaaatctctag 321  Q
    ||||||||| ||||||||||||| ||||| || |||||||||||| ||| ||||| | | ||||| |||||||| |||  |||||||| || |||||| |    
T  5445377 aatgcattccaactaaaaagctcgattgactcactttcattcattattggcatttcgaatattttgtcaactctccctttaagtaaatgcatatctctgg 5445278  T
Q  322 ttgtgat 328  Q
    |||||||    
T  5445277 ttgtgat 5445271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 22 - 266
Target Start/End: Original strand, 5075236 - 5075480
Alignment:
Q  22 catcataacttattcttaacttcttctgcacttgatcatgaggaattattttgagtttctccaatacaagatcccacttatattttgccttatcaaacaa 121  Q
    ||||||| |||||| |||||||||||||||||||||||| ||||||| || |||||||||||||||||   | |||||    | |  || ||||||||||    
T  5075236 catcatagcttatttttaacttcttctgcacttgatcattaggaattcttatgagtttctccaatacacacttccactctgctatccccctatcaaacaa 5075335  T
Q  122 ataagacccaaggacttcgagagctagcagcaatcctccacaatattcaactgcattttcggcaactctaataaaatctcttgtaggactcgcttccttg 221  Q
    ||| ||||||| |||||  ||||||||| ||||||| ||| |||| || ||| |||||   | || || |  |||||||  | ||||||| ||||  |||    
T  5075336 atatgacccaatgacttgtagagctagcggcaatcccccagaatactccactacatttcttgaaattccagcaaaatcttctataggacttgcttgtttg 5075435  T
Q  222 aatgcattctaactaaaaagctcaattgattctctttcattcatt 266  Q
    ||||||| | |||||||||||||||||||||| ||||||| ||||    
T  5075436 aatgcatgccaactaaaaagctcaattgattcactttcatccatt 5075480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 296
Target Start/End: Original strand, 5183465 - 5183731
Alignment:
Q  30 cttattcttaacttcttctgcacttgatcatgaggaattattttgagtttctccaatacaagatcccacttatattttgccttatcaaacaaataagacc 129  Q
    |||||| |||||||||| || |||||||||| ||||||| |||||||||| || ||| ||   | ||| |  | | |  || ||||||||||||| || |    
T  5183465 cttatttttaacttcttttgtacttgatcattaggaattcttttgagtttttctaatgcacacttccattcttctatccccatatcaaacaaatatgatc 5183564  T
Q  130 caaggacttcgagagctagcagcaatcctccacaatattcaactgcattttcggcaactctaataaaatctcttgtaggactcgcttccttgaatgcatt 229  Q
    |||||||||| ||||||||  ||||||| ||| |||| |||||| |||||   | || || |  |||| ||  | ||||||  |||| |||||||||||     
T  5183565 caaggacttccagagctagtggcaatcccccagaatactcaactacatttcttgaaattccagcaaaaccttctctaggacctgcttgcttgaatgcatg 5183664  T
Q  230 ctaactaaaaagctcaattgattctctttcattcattgttgtcattttgtaaattttatcaactcta 296  Q
    | ||||||| |||||||||||||| ||||||| |||| || |||||||||||| ||  |||||||||    
T  5183665 ccaactaaatagctcaattgattcgctttcatccattattttcattttgtaaacttggtcaactcta 5183731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 253
Target Start/End: Original strand, 5356216 - 5356352
Alignment:
Q  117 aacaaataagacccaaggacttcgagagctagcagcaatcctccacaatattcaactgcattttcggcaactctaataaaatctcttgtaggactcgctt 216  Q
    |||||||| |||||||||||||| ||||| ||| | ||||||||| |||| |||||| |||||  || || || |   |||||| |||||||||| ||||    
T  5356216 aacaaatacgacccaaggacttctagagccagcggtaatcctccagaatactcaactacatttctggaaattccagctaaatcttttgtaggacttgctt 5356315  T
Q  217 ccttgaatgcattctaactaaaaagctcaattgattc 253  Q
     ||||||||||| | ||||||| ||||||||||||||    
T  5356316 gcttgaatgcatgccaactaaatagctcaattgattc 5356352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 261
Target Start/End: Original strand, 5068579 - 5068818
Alignment:
Q  22 catcataacttattcttaacttcttctgcacttgatcatgaggaattattttgagtttctccaatacaagatcccacttatattttgcct-tatcaaaca 120  Q
    ||||||| |||||||||||||||| ||| ||||||| || ||||||| |||||||||| |||||||||   | ||| || | ||    || |||||||||    
T  5068579 catcatagcttattcttaacttctcctgtacttgattattaggaattcttttgagtttgtccaatacacttttcca-ttctgttacctctctatcaaaca 5068677  T
Q  121 aataagacccaaggacttcgagagctagcagcaatcctccacaatattcaactgcattttcggcaactctaataaaatctcttgtaggactcgcttcctt 220  Q
    |||| |||||||||||||| | ||||||  ||||||| ||| |||| |||||  | |||  || || |  |  ||||||| ||||||||| ||||| |||    
T  5068678 aatatgacccaaggacttccaaagctagtggcaatcccccagaatactcaacgacctttctggaaattgcagcaaaatcttttgtaggacccgcttgctt 5068777  T
Q  221 gaatgcattctaactaaaaagctcaattgattctctttcat 261  Q
    |||||| | | ||||||| |||| ||||||||| |||||||    
T  5068778 gaatgcgtgccaactaaatagcttaattgattcactttcat 5068818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 5148451 - 5148531
Alignment:
Q  9 acatcatcaaaatcatcataacttattcttaacttcttctgcacttgatcatgaggaattattttgagtttctccaataca 89  Q
    |||||||  ||||| ||||| |||||| ||||||||||||||||||||||||  |||||| |||||||||| |||||||||    
T  5148451 acatcatttaaatcgtcatagcttatttttaacttcttctgcacttgatcattgggaattcttttgagtttgtccaataca 5148531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 261
Target Start/End: Complemental strand, 5424250 - 5424011
Alignment:
Q  22 catcataacttattcttaacttcttctgcacttgatcatgaggaattattttgagtttctccaatacaagatcccacttatattttgcct-tatcaaaca 120  Q
    ||||||| |||||||||||||||| ||| ||||||| || ||||||| |||||||||| |||||| ||   | ||| || | |  | ||| | || ||||    
T  5424250 catcatagcttattcttaacttctcctgtacttgattattaggaattcttttgagtttttccaatgcacttttcca-ttctgtaatccctctgtcgaaca 5424152  T
Q  121 aataagacccaaggacttcgagagctagcagcaatcctccacaatattcaactgcattttcggcaactctaataaaatctcttgtaggactcgcttcctt 220  Q
    |||| |||||||||||||| | ||||||  ||||||| ||| |||| |||||| |||||   | || |  |  ||||||| ||||||||||||||| |||    
T  5424151 aatatgacccaaggacttccaaagctagtggcaatccaccagaataatcaactacatttctagaaatttcagcaaaatcttttgtaggactcgcttgctt 5424052  T
Q  221 gaatgcattctaactaaaaagctcaattgattctctttcat 261  Q
    ||| |||| | |||| || |||||||||||||| |||||||    
T  5424051 gaaggcatgccaacttaatagctcaattgattcactttcat 5424011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 5368957 - 5368893
Alignment:
Q  22 catcataacttattcttaacttcttctgcacttgatcatgaggaattattttgagtttctccaat 86  Q
    ||||||| |||||||||||||||||||| ||||||| || ||||||| |||||||||| ||||||    
T  5368957 catcatagcttattcttaacttcttctgtacttgattattaggaattcttttgagtttgtccaat 5368893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 261
Target Start/End: Original strand, 5104546 - 5104616
Alignment:
Q  191 aataaaatctcttgtaggactcgcttccttgaatgcattctaactaaaaagctcaattgattctctttcat 261  Q
    |||||||||| |||| |||||| ||| ||||||||||| | ||||||| |||||||||||||| |||||||    
T  5104546 aataaaatcttttgtcggactcacttgcttgaatgcatgccaactaaatagctcaattgattcactttcat 5104616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 296
Target Start/End: Complemental strand, 5395355 - 5395266
Alignment:
Q  207 ggactcgcttccttgaatgcattctaactaaaaagctcaattgattctctttcattcattgttgtcattttgtaaattttatcaactcta 296  Q
    |||||||||| ||||||||||| | ||||||| |||||||||||||| ||| | | ||||  | |||||||||||||||  |||||||||    
T  5395355 ggactcgcttgcttgaatgcatgccaactaaagagctcaattgattcgcttccgtccatttctttcattttgtaaatttggtcaactcta 5395266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 5094538 - 5094474
Alignment:
Q  22 catcataacttattcttaacttcttctgcacttgatcatgaggaattattttgagtttctccaat 86  Q
    ||||||| |||||||||||||||||||| | ||||| || ||||||| |||||||||| ||||||    
T  5094538 catcatagcttattcttaacttcttctgtaattgattattaggaattcttttgagtttgtccaat 5094474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 5159186 - 5159245
Alignment:
Q  202 ttgtaggactcgcttccttgaatgcattctaactaaaaagctcaattgattctctttcat 261  Q
    ||||||||||||||| ||||||||| | | ||||||| |||||||||||||| |||||||    
T  5159186 ttgtaggactcgcttgcttgaatgcgtgccaactaaatagctcaattgattcactttcat 5159245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 260
Target Start/End: Complemental strand, 5094358 - 5094300
Alignment:
Q  202 ttgtaggactcgcttccttgaatgcattctaactaaaaagctcaattgattctctttca 260  Q
    ||||||||||||||| ||||||||||| | ||||||| | |||||||||||| ||||||    
T  5094358 ttgtaggactcgcttgcttgaatgcatgccaactaaataactcaattgattcactttca 5094300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 5104385 - 5104441
Alignment:
Q  30 cttattcttaacttcttctgcacttgatcatgaggaattattttgagtttctccaat 86  Q
    ||||||||||||||||| || ||||||| || ||||||| |||||||||| ||||||    
T  5104385 cttattcttaacttcttttgtacttgattattaggaattcttttgagtttgtccaat 5104441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 5133410 - 5133477
Alignment:
Q  22 catcataacttattcttaacttcttctgcacttgatcatgaggaattattttgagtttctccaataca 89  Q
    ||||||| |||||| ||| |||||| || ||||||| || ||||||| || |||||||||||||||||    
T  5133410 catcatagcttatttttagcttcttttgtacttgattattaggaattcttctgagtttctccaataca 5133477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 280
Target Start/End: Original strand, 5148647 - 5148722
Alignment:
Q  205 taggactcgcttccttgaatgcattctaactaaaaagctcaattgattctctttcattcattgttgtcattttgta 280  Q
    |||||||||||| ||||||||||| | |||||||||||  ||||||||| | ||||| ||||  | ||||||||||    
T  5148647 taggactcgcttgcttgaatgcatgccaactaaaaagcataattgattcaccttcatccatttctttcattttgta 5148722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 5348864 - 5348805
Alignment:
Q  30 cttattcttaacttcttctgcacttgatcatgaggaattattttgagtttctccaataca 89  Q
    |||||||||||||| | ||| ||||||| || ||||||| |||||||||| |||||||||    
T  5348864 cttattcttaacttttcctgtacttgattattaggaattcttttgagtttgtccaataca 5348805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 22585822 - 22586135
Alignment:
Q  18 aaatcatcataacttattcttaacttcttctgcacttgatcatgaggaattattttgagtttctccaatacaagatcccacttatattttgcct-tatca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||   | ||| || | ||   ||| || ||    
T  22585822 aaatcatcataacttattcttaacttcttctgcacttgatcattaggaattcttttgagtttctccaatacacattgcca-ttctgttacccctctagca 22585920  T
Q  117 aacaaataagacccaaggacttcgagagctagcagcaatcctccacaatattcaactgcattttcggcaactctaataaaatctcttgtaggactcgctt 216  Q
    |||||||||  |||||||||||| ||||||||| |||| |||||| |||| | |||  ||||   || || |  |  |||||||  | | || |||||||    
T  22585921 aacaaataacgcccaaggacttccagagctagcggcaaccctccagaataattaaccacattcatggaaatttcagaaaaatctactttgggtctcgctt 22586020  T
Q  217 ccttgaatgcattctaactaaaaagctcaattgattctctttcattcattgttgtcattttgtaaattttatcaactctacctgaaagtaaatccaaatc 316  Q
     ||||||||||||| ||||||||||||||||||| || ||||||||||||  ||||||| |||| ||| | |||||||| |||   |||||| |||||||    
T  22586021 gcttgaatgcattccaactaaaaagctcaattgactcactttcattcattactgtcattatgtatattctgtcaactctccctctgagtaaaaccaaatc 22586120  T
Q  317 tctagttgtgatgat 331  Q
    ||| |||||||||||    
T  22586121 tcttgttgtgatgat 22586135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 22 - 266
Target Start/End: Complemental strand, 4334049 - 4333805
Alignment:
Q  22 catcataacttattcttaacttcttctgcacttgatcatgaggaattattttgagtttctccaatacaagatcccacttatattttgccttatcaaacaa 121  Q
    ||||||| |||||| |||||||||| || ||||||||||  |||||||||||||||||||||||||||  |  |||||   || |  || ||||||||||    
T  4334049 catcatagcttatttttaacttcttatgtacttgatcattgggaattattttgagtttctccaatacacaaatccactctaatatctccctatcaaacaa 4333950  T
Q  122 ataagacccaaggacttcgagagctagcagcaatcctccacaatattcaactgcattttcggcaactctaataaaatctcttgtaggactcgcttccttg 221  Q
    ||| ||||| |||||||| ||||||||| | ||||| ||| |||| | |||  |||||  || || |  |  |||||||  ||| ||||||| || ||||    
T  4333949 ataggacccgaggacttcaagagctagcggtaatcccccagaatacttaacaacatttctggaaatttcagaaaaatcttctgtgggactcgtttgcttg 4333850  T
Q  222 aatgcattctaactaaaaagctcaattgattctctttcattcatt 266  Q
    ||||||| | |||||||||||||||  ||||| ||||||| ||||    
T  4333849 aatgcatgcaaactaaaaagctcaagagattcactttcatccatt 4333805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 22 - 293
Target Start/End: Complemental strand, 4358907 - 4358636
Alignment:
Q  22 catcataacttattcttaacttcttctgcacttgatcatgaggaattattttgagtttctccaatacaagatc-ccact-tatattttgccttatcaaac 119  Q
    |||||||||||||| |||||||||| |||||||||||||  |||||| |||| ||||| |||||||| ||||| ||||| || | | | || ||||||||    
T  4358907 catcataacttatttttaacttcttatgcacttgatcattgggaattctttttagtttatccaatac-agatctccactctaaaatct-ccctatcaaac 4358810  T
Q  120 aaataagacccaaggacttcgagagctagcagcaatcctccacaatattcaactgcattttcggcaactctaataaaatctcttgtaggactcgcttcct 219  Q
    |||||||||||||||||||| ||||||||  |||||||  || |||| | |||| |||||| || || |  |  |||||||  | |||| || | || ||    
T  4358809 aaataagacccaaggacttcaagagctagtggcaatcccgcagaatacttaactacatttttggaaatttcagaaaaatcttctctaggccttgtttgct 4358710  T
Q  220 tgaatgcattctaactaaaaagctcaattgattctctttcattcattgttgtcattttgtaaattttatcaact 293  Q
    |||| || | | |||||||||||||||  ||||| ||||||| ||||  | ||||| |||| ||||||||||||    
T  4358709 tgaacgcgtgccaactaaaaagctcaagagattcactttcatccatttctttcattatgtatattttatcaact 4358636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 179
Target Start/End: Original strand, 4125942 - 4126099
Alignment:
Q  22 catcataacttattcttaacttcttctgcacttgatcatgaggaattattttgagtttctccaatacaagatcccacttatattttgccttatcaaacaa 121  Q
    ||||||| |||||| |||||||||| || ||||||||||  |||||| ||||||||||||||||||||  |  |||||   ||    || ||||||||||    
T  4125942 catcatagcttatttttaacttcttatgtacttgatcattgggaattcttttgagtttctccaatacacaaatccactctgatacctccctatcaaacaa 4126041  T
Q  122 ataagacccaaggacttcgagagctagcagcaatcctccacaatattcaactgcattt 179  Q
    ||| || ||||||||||| ||||||||  ||||||| ||| |||||| |||| |||||    
T  4126042 ataggatccaaggacttcaagagctagtggcaatcccccagaatatttaactacattt 4126099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 296
Target Start/End: Complemental strand, 25568399 - 25568215
Alignment:
Q  112 tatcaaacaaataagacccaaggacttcgagagctagcagcaatcctccacaatattcaactgcattttcggcaactctaataaaatc-tcttgtaggac 210  Q
    ||||||||||||| |||||||| ||||| ||||||||| ||||||||||| |||| |||| | |||||  || || |  |  |||||| |||| |||| |    
T  25568399 tatcaaacaaatatgacccaagcacttctagagctagcggcaatcctccagaatactcaattacatttctggaaatttcagcaaaatcatctt-tagggc 25568301  T
Q  211 tcgcttccttgaatgcattctaactaaaaagctcaattgattctctttcattcattgttgtcattttgtaaattttatcaactcta 296  Q
    | |||| ||||||||||| | | |||||||||||||||||||| ||||||  ||||  | ||||| |||| |||| ||||||||||    
T  25568300 ttgcttgcttgaatgcatgccagctaaaaagctcaattgattcactttcacacatttctttcattgtgtatatttgatcaactcta 25568215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 292
Target Start/End: Original strand, 4322615 - 4322877
Alignment:
Q  30 cttattcttaacttcttctgcacttgatcatgaggaattattttgagtttctccaatacaagatcccacttatattttgccttatcaaacaaataagacc 129  Q
    |||||| |||||||||  || ||||||||||  |||||| ||||||||||||||||||||  |  |||||    |    || ||||||||||||| ||||    
T  4322615 cttatttttaacttctgatgtacttgatcattgggaattcttttgagtttctccaatacacaaatccactctgttacctccctatcaaacaaataggacc 4322714  T
Q  130 caaggacttcgagagctagcagcaatcctccacaatattcaactgcattttcggcaa-ctctaataaaatctcttgtaggactcgcttccttgaatgcat 228  Q
    |||||||||| ||||||||| ||||||  ||| |||| | |||| |||||  || ||  ||| | ||||||| |  |||| ||||||| |||||||||||    
T  4322715 caaggacttcaagagctagcggcaatctcccagaatactgaactacatttgtggaaatttctga-aaaatctttgctaggcctcgcttgcttgaatgcat 4322813  T
Q  229 tctaactaaaaagctcaattgattctctttcattcattgttgtcattttgtaaattttatcaac 292  Q
     | |||||||||||||||  ||||| ||||||| ||||  | ||||| |||| ||||| |||||    
T  4322814 gccaactaaaaagctcaagagattcactttcatccatttctttcattatgtatattttgtcaac 4322877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 4343430 - 4343294
Alignment:
Q  30 cttattcttaacttcttctgcacttgatcatgaggaattattttgagtttctccaatacaagatcccacttatattttgccttatcaaacaaataagacc 129  Q
    |||||| |||||||||| ||||||| |||||  |||||| ||||||||||||||||||||  |  |||||   ||    || | ||||||||||| ||||    
T  4343430 cttatttttaacttcttatgcacttcatcattgggaatttttttgagtttctccaatacagaaatccactctaatagctccctctcaaacaaataggacc 4343331  T
Q  130 caaggacttcgagagctagcagcaatcctccacaata 166  Q
    |||||||||| ||||||||  |||||||  |||||||    
T  4343330 caaggacttcaagagctagaggcaatcccgcacaata 4343294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 4351636 - 4351587
Alignment:
Q  112 tatcaaacaaataagacccaaggacttcgagagctagcagcaatcctcca 161  Q
    |||||||||| || |||||||||||||| ||||||||| |||| ||||||    
T  4351636 tatcaaacaagtaggacccaaggacttcaagagctagcggcaaccctcca 4351587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 6714267 - 6714223
Alignment:
Q  41 cttcttctgcacttgatcatgaggaattattttgagtttctccaa 85  Q
    ||||||||| |||||||||||||||||   |||||||||||||||    
T  6714267 cttcttctgtacttgatcatgaggaatacatttgagtttctccaa 6714223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 36215593 - 36215641
Alignment:
Q  218 cttgaatgcattctaactaaaaagctcaattgattctctttcattcatt 266  Q
    ||||||||||| | |||||||||||||||||||||| ||||||| ||||    
T  36215593 cttgaatgcatgccaactaaaaagctcaattgattcactttcatccatt 36215641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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