View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7284_low_16 (Length: 312)
Name: NF7284_low_16
Description: NF7284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7284_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 6330005 - 6330296
Alignment:
| Q |
1 |
aaaaatccctaaatatgaatttttctagtgagcttgattttcaaatgtgttttgtttaattaatttcatcctcaaatataactcttattagtcggtttag |
100 |
Q |
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| T |
6330005 |
aaaattccctaaatatgaatttttctagtgagcttgatcttcaaatgtgttttgtttaattaatttcatcctcaaatataactcttattagttggtttag |
6330104 |
T |
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| Q |
101 |
ttcataaaattactgacaaaagatacatttaataatacttttgaatcatttgatgattgtcttatacattcaaagatcaaaacgacaatttactctaagt |
200 |
Q |
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| T |
6330105 |
ttcataaaattactaacaaaagatacattcaattatacttttgaatcatttgatgattgtcttatacattcaaagatcaaaacgacaatttactctaagt |
6330204 |
T |
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| Q |
201 |
cccacgtaaagattttgttttaaaaagattgagcataacacgcattgttatgcatctaatctaagtttagcagataaagaatttgattgaaa |
292 |
Q |
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| T |
6330205 |
cttacgtagagatttagttttaaaaagattgagcataacacacattgttacgcatctaatctaagtttagtagataaagaatttgattgaaa |
6330296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 6333958 - 6333990
Alignment:
| Q |
166 |
acattcaaagatcaaaacgacaatttactctaa |
198 |
Q |
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| T |
6333958 |
acattcaaagatcaaaacgacaatttattctaa |
6333990 |
T |
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