View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7284_low_19 (Length: 305)
Name: NF7284_low_19
Description: NF7284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7284_low_19 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 11 - 305
Target Start/End: Complemental strand, 12056642 - 12056348
Alignment:
| Q |
11 |
agaaaatcaggtcaaacgaaaagttgcagcctgagagaacttattcatgccatgttttgacgcatcatgcaactggttaataatttgcatatactatacg |
110 |
Q |
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| T |
12056642 |
agaaaatcaggtcaaacgaaaagttgcagcctgagagaacttattcatgccatgttttgacgcatcgtgcaactggttaataatttgcatatactagacg |
12056543 |
T |
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| Q |
111 |
ttaccgatccttaccagtcaccaaaccagttccctccgagctaacattttggtgaggataaatttttaacgtattcttgctaataagtgaaaagtgggat |
210 |
Q |
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| T |
12056542 |
taaccgatccttaccagtcaccaaaccagttccctccgagctaacattttgatgaggataaatttttaaggtattcttgctaataagtgaaaactgggat |
12056443 |
T |
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| Q |
211 |
tcatagcccaaaggggacagaacagaagaaacagtttacatgaagttccaccatgtcacactcacacctaagaaaaatatgaccccatagaccaa |
305 |
Q |
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| T |
12056442 |
tcatagcccaaaggggacagaacagaagaaacagtttacatgaagttccaccatgtcacactcacacctaagaaaaatatgaccccatagaccaa |
12056348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 305
Target Start/End: Complemental strand, 12045162 - 12044914
Alignment:
| Q |
52 |
tattcatgccatgttttgacgcatcatgcaactggttaataatttgcatatactatacgttaccgatccttaccagtcaccaaaccagttccctccgagc |
151 |
Q |
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| T |
12045162 |
tattcatgccaagttttgacacatcatgcaactggttaataatttgcctctagaagaagttatcgatgattaccattcaccaaatgagttccctcata-- |
12045065 |
T |
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| Q |
152 |
taacattttggtgaggataaatttttaacgtattcttgctaataagtg-------aaaagtgggattcatagcccaaaggggacagaacagaagaaacag |
244 |
Q |
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| T |
12045064 |
----attttgacgaggataagtttttcaggtattctcgttattaattattaagaaaaaaatgggattcttagcccaaaggg-----aacagaagaaacaa |
12044974 |
T |
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| Q |
245 |
tttacatgaagttccaccatgtcacactcacacctaagaaaaatatgaccccatagaccaa |
305 |
Q |
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| T |
12044973 |
tt-acatgaagttccaccatgtcacactcacacctaagaaaaatatgatcccaaagaccaa |
12044914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 12049388 - 12049348
Alignment:
| Q |
257 |
tccaccatgtcacactcacacctaagaaaaatatgacccca |
297 |
Q |
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| T |
12049388 |
tccatcatgtcacactcacacctaagaaaaatatgacccca |
12049348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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