View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7284_low_20 (Length: 288)
Name: NF7284_low_20
Description: NF7284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7284_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 15237089 - 15237336
Alignment:
| Q |
20 |
attgatgaggttcttcaaaaaactggtgtgaaggctaaggatattgggattttggttgtgaattgtagtttgtttaatccaacaccatctctttctgcca |
119 |
Q |
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| T |
15237089 |
attgatgaggttcttcaaaaaactggtgtgaaggctaaggatattgggattttggttgtgaattgtagtttgtttaatccaacaccatctctttctgcca |
15237188 |
T |
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| Q |
120 |
tgattgtgaatcattataagttgagaggaaatatcttgagttataatcttggtggtatgggttgtagtgctggtcttatctctattgaccttgccaaaca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15237189 |
tgattgtgaatcattataagttgagaggaaatatcttgagttataatcttggtggtatgggttgtagtgctggtcttatctctattgaccttgccaaaca |
15237288 |
T |
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| Q |
220 |
gctcctacaggtagtatattatatctctctaatttccattatccaaaa |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15237289 |
gctcctacaggtagtatattatatctctctaatttccataatccaaaa |
15237336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 38 - 232
Target Start/End: Original strand, 34051936 - 34052130
Alignment:
| Q |
38 |
aaaactggtgtgaaggctaaggatattgggattttggttgtgaattgtagtttgtttaatccaacaccatctctttctgccatgattgtgaatcattata |
137 |
Q |
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| T |
34051936 |
aaaactggtgttaaggctaaggatattgggattttggttgtgaattgtagtttgtttaatcctacaccttctctttctgctatgattgtgaatcattata |
34052035 |
T |
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| Q |
138 |
agttgagaggaaatatcttgagttataatcttggtggtatgggttgtagtgctggtcttatctctattgaccttgccaaacagctcctacaggta |
232 |
Q |
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| T |
34052036 |
agttaagagggaatgttcaaagttataatcttggtggtatgggttgtagtgctggacttatctctattgaccttgctaagcagctcctacaggta |
34052130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 31197688 - 31197740
Alignment:
| Q |
161 |
tataatcttggtggtatgggttgtagtgctggtcttatctctattgaccttgc |
213 |
Q |
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| T |
31197688 |
tataatcttggaggtatgggttgtagtgctggtcttatttcaattgatcttgc |
31197740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 95 - 192
Target Start/End: Original strand, 48670642 - 48670739
Alignment:
| Q |
95 |
aatccaacaccatctctttctgccatgattgtgaatcattataagttgagaggaaatatcttgagttataatcttggtggtatgggttgtagtgctgg |
192 |
Q |
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| T |
48670642 |
aatccaacaccatcattgtcagccatgattataaatcattataagatgaggggaaatattttgagttataatcttggtggtatgggttgtagtgctgg |
48670739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 213
Target Start/End: Complemental strand, 49041935 - 49041796
Alignment:
| Q |
74 |
gttgtgaattgtagtttgtttaatccaacaccatctctttctgccatgattgtgaatcattataagttgagaggaaatatcttgagttataatcttggtg |
173 |
Q |
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||||| ||||||||||||||||| ||||| || || |||||||| ||||||||||| ||||| ||| | ||| ||| || || |||||||| || | |
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| T |
49041935 |
gttgtaaattgtagtttgtttaacccaactccttcactttctgcaatgattgtgaaccattacaagcttagaacaaacattaaaagctataatctcggag |
49041836 |
T |
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| Q |
174 |
gtatgggttgtagtgctggtcttatctctattgaccttgc |
213 |
Q |
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| T |
49041835 |
gtatgggttgtagtgctggtcttatttcaattgatcttgc |
49041796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 198
Target Start/End: Original strand, 10277326 - 10277471
Alignment:
| Q |
53 |
gctaaggatattgggattttggttgtgaattgtagtttgtttaatccaacaccatctctttctgccatgattgtgaatcattataagttgagaggaaata |
152 |
Q |
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||||| |||||||| ||| | || ||||||||| |||| |||||||| |||||||| ||||| | | ||||| ||||||||||| | |||||||||| |
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| T |
10277326 |
gctaaagatattggaattcttgtggtgaattgttgtttatttaatcctacaccatcactttcagatactattgttaatcattataaacttagaggaaata |
10277425 |
T |
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| Q |
153 |
tcttgagttataatcttggtggtatgggttgtagtgctggtcttat |
198 |
Q |
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| T |
10277426 |
ttttgatctataatcttagtggtatgggatgcagtgctggtgttat |
10277471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 213
Target Start/End: Original strand, 26463858 - 26463997
Alignment:
| Q |
74 |
gttgtgaattgtagtttgtttaatccaacaccatctctttctgccatgattgtgaatcattataagttgagaggaaatatcttgagttataatcttggtg |
173 |
Q |
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||||| ||||||||||||| ||| ||||| || || |||||||| ||||||||||| ||| | ||| | ||| ||| || || ||||||||||| | |
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| T |
26463858 |
gttgtaaattgtagtttgtataacccaactccttccctttctgcaatgattgtgaaccatgacaagctaagaacaaacattaaaagctataatcttggag |
26463957 |
T |
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| Q |
174 |
gtatgggttgtagtgctggtcttatctctattgaccttgc |
213 |
Q |
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| T |
26463958 |
gtatgggttgtagtgctggtcttatttcaattgatcttgc |
26463997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 213
Target Start/End: Original strand, 26452754 - 26452893
Alignment:
| Q |
74 |
gttgtgaattgtagtttgtttaatccaacaccatctctttctgccatgattgtgaatcattataagttgagaggaaatatcttgagttataatcttggtg |
173 |
Q |
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||||| ||||||||||||||||||||||| ||||| ||||| || |||||||| || | ||||| || || || ||||| |||| |||| | |||| |
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| T |
26452754 |
gttgttaattgtagtttgtttaatccaacgccatcactttcagctatgattgttaacaaatataaattaaggggtaatattagaagttttaatttgggtg |
26452853 |
T |
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| Q |
174 |
gtatgggttgtagtgctggtcttatctctattgaccttgc |
213 |
Q |
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| T |
26452854 |
gtatgggttgtagtgctggtgttatagctattgatcttgc |
26452893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 231
Target Start/End: Complemental strand, 23499922 - 23499753
Alignment:
| Q |
62 |
attgggattttggttgtgaattgtagtttgtttaatccaacaccatctctttctgccatgattgtgaatcattataagttgagaggaaatatcttgagtt |
161 |
Q |
| |
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||||| ||| || |||||||||||||| | ||| |||||| || || || ||||| ||||| | ||||| |||||| ||||||| || || |||||| |
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| T |
23499922 |
attggaattctgattgtgaattgtagtcttttttgtccaactccgtcactctctgcaatgatcatcaatcactataagctgagaggtaacataatgagtt |
23499823 |
T |
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| Q |
162 |
ataatcttggtggtatgggttgtagtgctggtcttatctctattgaccttgccaaacagctcctacaggt |
231 |
Q |
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| T |
23499822 |
acaatcttggtgggatgggatgcagtgctgggattatttcaattgatcttgctaaagagcttctccaggt |
23499753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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