View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7284_low_21 (Length: 258)
Name: NF7284_low_21
Description: NF7284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7284_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 35442311 - 35442548
Alignment:
| Q |
1 |
ttctatgagatcctgtacctgtaggaagacaagtaatccaaaacnnnnnnngatatttttagtaaatctctcatagttgtaaaatgtgaactgaacatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35442311 |
ttctatgagatcctgtacctgtag-aagacaagtaatccaaaacaaaaaaagttatttttagtaaatatctcatagttgtaaaatgtgaactgaacatgt |
35442409 |
T |
|
| Q |
101 |
aatagactaatagtgaagagatttggaagaggggagagggaaaaccatcaaggatttgcttatgtnnnnnnntaacacagttccacatagttttcttata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
35442410 |
aatagactaatagtgaagagatttggaagaggggagagggaaaaccatcaaggatttgcttatgtaaaaaaataacacagttccacatagttttcttata |
35442509 |
T |
|
| Q |
201 |
actttgtcaaaccattatcttatggaataagttgattta |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35442510 |
actttgtcaaaccattatcttatggaataagttgattta |
35442548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University