View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7284_low_22 (Length: 255)
Name: NF7284_low_22
Description: NF7284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7284_low_22 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 32849678 - 32849434
Alignment:
| Q |
11 |
agaatataacctcgatttggacgacaatcaaatctaaaaatgtcaacccatcacgaacttcaatgacggatctgcatttcatttacatacaaattaacac |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32849678 |
agaaaataacctcgatttggacgacaatcaaatctaaaaatgtcaacccatcacgaacttcaatgacggatctgcatttcatttacatacaaattaacac |
32849579 |
T |
|
| Q |
111 |
ttacaaatacagatcaacaaaaaataatgatctaggacnnnnnnnncaatggttcaagaaaaaatatatcccactacatgtcatcaaattaattctctac |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32849578 |
ttacaaatacagatcaacaaaaaataatgatctaggacaaaaaaaacaatggttcaagaaaaaatatatcccactacatgtcatcaaatgaattctctac |
32849479 |
T |
|
| Q |
211 |
tttacatagattctacattcaatatattcaagaaatagttaacat |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32849478 |
tttacatagattctacattcaatatattcaagaaatagttcacat |
32849434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 29055356 - 29055431
Alignment:
| Q |
19 |
acctcgatttggacgacaatcaaatctaaaaatgtcaacccatcacgaacttcaatgacggatctgcatttcattt |
94 |
Q |
| |
|
||||| ||||||| |||||| ||||| | |||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
29055356 |
acctcaatttggatgacaattaaatcaagaaatgtcaacccctcacgaacttcaatgacagatctgcatttcattt |
29055431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University