View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7284_low_5 (Length: 444)
Name: NF7284_low_5
Description: NF7284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7284_low_5 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 48 - 444
Target Start/End: Original strand, 1046079 - 1046471
Alignment:
| Q |
48 |
caaagccataataacacgttaatctccaattaccagcttctctatcctccataataacacgttaacccttttatttatctatgaattgcataatatatgt |
147 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1046079 |
caaagccataataacacgttaatctccaattaccagcttctctatcctccataataacacgttaacccttttatttatctatgaattgcataatatatgt |
1046178 |
T |
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| Q |
148 |
tgtattttttgatatgttgagagtaaactttgtcatgaccataataaaactcttttgcccggtgcgttgcacgggtcaaagactaattaataacatacaa |
247 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
1046179 |
tgtattttttgatatgttgagagtaaactttgtcatcaccataataaaactcttttgcccggtgcattgcacgggtcaaagac----taataacatacaa |
1046274 |
T |
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| Q |
248 |
acacatagtttagtcccaagtcaatttaacatgnnnnnnnnnnnnnnnaagggaagtcaatttagcatatataaacgcacaaacatataacgtgtgtctg |
347 |
Q |
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| T |
1046275 |
acacatagtttagtcccaagtcaatttaacatgttttttttcttttttaagggatgtcaatttagcatatctaaacacacaaacatccaacgtgtgtctg |
1046374 |
T |
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| Q |
348 |
catcaaattcaatcaatgcaaaatgaccaatattctttctatgatattgtttgttattcttaatctcttgttcttttttaaattatctaccgcaatt |
444 |
Q |
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| T |
1046375 |
catcaaattcaatcaatgcaaaatgaccaatattctttctatgatattgtttgttattcttaatctcttgttcttttttaaattatctaccgcaatt |
1046471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 296 - 444
Target Start/End: Original strand, 1071133 - 1071284
Alignment:
| Q |
296 |
aagggaagtcaatttagcatatataaacgcacaaacatataacgtgtgtctgcatcaaattcaatcaatgcaaaatgaccaatattctttctatgatatt |
395 |
Q |
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|||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||| |
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| T |
1071133 |
aaggaaagtcaatttagcatatataaacgcacaaacatacaatgtgtgtctgcatcaaattcattcaatgcaaaatggccaatattcttcctatgatatt |
1071232 |
T |
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| Q |
396 |
gtttgttattcttaatctc---ttgttcttttttaaattatctaccgcaatt |
444 |
Q |
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| T |
1071233 |
gtttgttattcttaatctcatattgttcttctttcaattatctacctcaatt |
1071284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 296 - 437
Target Start/End: Original strand, 1086797 - 1086941
Alignment:
| Q |
296 |
aagggaagtcaatttagcatatataaacgcacaaacatataacgtgtgtctgcatcaaattcaatcaatgcaaaatgaccaatattctttctatgatatt |
395 |
Q |
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|||| |||||||||||||||||||||||||||||||||| || |||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
1086797 |
aaggaaagtcaatttagcatatataaacgcacaaacataaaatgtgtgtctgcctcaaactcaatcaatgcaaaatgaccaatattcttcctatgatatt |
1086896 |
T |
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| Q |
396 |
gtttgttattcttaatctc---ttgttcttttttaaattatctac |
437 |
Q |
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| T |
1086897 |
gtttgttattcttagtctcctgttgttcttctttcaattatctac |
1086941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 102
Target Start/End: Complemental strand, 27265268 - 27265173
Alignment:
| Q |
7 |
tcgaagaatatcccaagcatcacgacgacgtgcacgttcatcaaagccataataacacgttaatctccaattaccagcttctctatcctccataat |
102 |
Q |
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| T |
27265268 |
tcgaagtaaatcccaagcatcacgatgacgtgcacgttcagcaaaaccataataacaagttaatctctaatcactagcttctctatcctccataat |
27265173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 43321563 - 43321645
Alignment:
| Q |
16 |
atcccaagcatcacgacgacgtgcacgttcatcaaagccataataacacgttaatctccaattaccagcttctctatcctcca |
98 |
Q |
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| T |
43321563 |
atcccaagcatcacgacgacgggcacgttcaggaaagccataataacaagttaatctccagtcaccagcttctctatcctcca |
43321645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 7123836 - 7123763
Alignment:
| Q |
20 |
caagcatcacgacgacgtgcacgttcatcaaagccataataacacgttaatctccaattaccagcttctctatc |
93 |
Q |
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| T |
7123836 |
caagcatcacgacgacgagcacgttcaggaaagccataataacaagtcaatctccaatcaccagcttctttatc |
7123763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 24602321 - 24602247
Alignment:
| Q |
20 |
caagcatcacgacgacgtgcacgttcatcaaagccataataacacgttaatctccaattaccagcttctctatcc |
94 |
Q |
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| T |
24602321 |
caagcatcgcgatgacaggcacgttcaggaaagccataataaaaagttaatctccaatcacgagcgtctctatcc |
24602247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 51263020 - 51263098
Alignment:
| Q |
20 |
caagcatcacgacgacgtgcacgttcatcaaagccataataacacgttaatctccaattaccagcttctctatcctcca |
98 |
Q |
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| T |
51263020 |
caagcatcacaacgacgaacacgttcaagaaagccataataacaagttaatctccaatcaccagcttctttatcctcca |
51263098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 48950460 - 48950542
Alignment:
| Q |
16 |
atcccaagcatcacgacgacgtgcacgttcatcaaagccataataacacgttaatctccaattaccagcttctctatcctcca |
98 |
Q |
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||||||||||||||||| ||| ||||||||| ||||| ||||||| | ||||||||||||| |||||||||| ||||||||| |
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| T |
48950460 |
atcccaagcatcacgactacgagcacgttcaggaaagcgataataataagttaatctccaatcaccagcttctttatcctcca |
48950542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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