View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7284_low_8 (Length: 419)

Name: NF7284_low_8
Description: NF7284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7284_low_8
NF7284_low_8
[»] chr5 (22 HSPs)
chr5 (18-319)||(32849041-32849342)
chr5 (337-408)||(32849328-32849399)
chr5 (165-298)||(17258810-17258946)
chr5 (167-305)||(10125638-10125779)
chr5 (257-297)||(39257322-39257362)
chr5 (249-304)||(10771809-10771864)
chr5 (151-217)||(37588370-37588437)
chr5 (237-293)||(32172735-32172791)
chr5 (237-304)||(499652-499719)
chr5 (248-299)||(10391435-10391486)
chr5 (156-218)||(15074758-15074821)
chr5 (257-304)||(36542207-36542254)
chr5 (151-217)||(37526209-37526276)
chr5 (158-229)||(18543193-18543266)
chr5 (57-107)||(38105013-38105063)
chr5 (258-304)||(41535025-41535071)
chr5 (240-293)||(11095427-11095480)
chr5 (239-304)||(14331450-14331515)
chr5 (237-298)||(15015926-15015986)
chr5 (260-304)||(11615575-11615619)
chr5 (260-304)||(26004918-26004962)
chr5 (151-218)||(26390799-26390867)
[»] chr8 (21 HSPs)
chr8 (165-304)||(4560509-4560651)
chr8 (102-217)||(4558743-4558858)
chr8 (102-221)||(31862438-31862557)
chr8 (237-304)||(2487929-2487996)
chr8 (238-293)||(31884872-31884927)
chr8 (238-298)||(3953885-3953945)
chr8 (237-293)||(7918713-7918769)
chr8 (237-297)||(24326113-24326173)
chr8 (237-304)||(11376785-11376852)
chr8 (237-288)||(13652298-13652349)
chr8 (237-288)||(13710941-13710992)
chr8 (237-304)||(16162842-16162909)
chr8 (237-304)||(43045646-43045712)
chr8 (240-303)||(43385725-43385788)
chr8 (241-299)||(43504837-43504895)
chr8 (237-294)||(1664451-1664508)
chr8 (57-106)||(2833481-2833530)
chr8 (239-276)||(14242980-14243017)
chr8 (243-304)||(29417532-29417593)
chr8 (55-112)||(31118853-31118910)
chr8 (158-195)||(34551120-34551157)
[»] chr2 (16 HSPs)
chr2 (149-304)||(40158709-40158867)
chr2 (237-304)||(43530032-43530099)
chr2 (67-107)||(12313322-12313362)
chr2 (248-304)||(18179161-18179217)
chr2 (237-304)||(4350772-4350839)
chr2 (237-304)||(12313094-12313161)
chr2 (237-304)||(22878180-22878247)
chr2 (237-304)||(43259917-43259984)
chr2 (257-299)||(25609898-25609940)
chr2 (238-304)||(32364652-32364718)
chr2 (263-304)||(30990360-30990401)
chr2 (237-294)||(31982381-31982438)
chr2 (245-294)||(37276834-37276883)
chr2 (198-304)||(787373-787481)
chr2 (248-300)||(15377858-15377910)
chr2 (240-318)||(33319723-33319798)
[»] chr3 (19 HSPs)
chr3 (243-304)||(41057243-41057304)
chr3 (237-304)||(45590733-45590800)
chr3 (103-304)||(49465586-49465787)
chr3 (237-294)||(50211817-50211874)
chr3 (157-282)||(30573857-30573985)
chr3 (244-299)||(22667492-22667547)
chr3 (244-299)||(22724131-22724186)
chr3 (237-304)||(24158437-24158504)
chr3 (237-304)||(36189711-36189778)
chr3 (237-304)||(44014719-44014786)
chr3 (238-304)||(11253584-11253650)
chr3 (239-293)||(25459562-25459616)
chr3 (69-106)||(45554879-45554916)
chr3 (62-99)||(46434750-46434787)
chr3 (62-107)||(48387455-48387500)
chr3 (138-198)||(1125796-1125856)
chr3 (258-294)||(3622364-3622400)
chr3 (244-304)||(27294435-27294495)
chr3 (165-298)||(37273141-37273277)
[»] chr1 (27 HSPs)
chr1 (238-299)||(32958720-32958781)
chr1 (237-304)||(9507313-9507380)
chr1 (238-297)||(31517668-31517727)
chr1 (243-304)||(6292580-6292641)
chr1 (197-299)||(10199334-10199438)
chr1 (59-107)||(48064181-48064229)
chr1 (237-304)||(2295179-2295245)
chr1 (257-304)||(6659782-6659829)
chr1 (237-304)||(7252541-7252608)
chr1 (261-304)||(13037965-13038008)
chr1 (248-295)||(15581347-15581394)
chr1 (237-304)||(18327067-18327134)
chr1 (237-292)||(32515374-32515429)
chr1 (237-304)||(49517151-49517218)
chr1 (258-304)||(1730962-1731008)
chr1 (58-112)||(2194473-2194526)
chr1 (238-304)||(23373234-23373300)
chr1 (258-295)||(2832075-2832112)
chr1 (247-304)||(5082917-5082974)
chr1 (239-283)||(15709933-15709977)
chr1 (237-301)||(19462691-19462755)
chr1 (248-304)||(21002248-21002304)
chr1 (177-229)||(26184767-26184822)
chr1 (67-107)||(33527281-33527321)
chr1 (239-299)||(35017667-35017726)
chr1 (67-107)||(35058906-35058946)
chr1 (244-304)||(37241742-37241801)
[»] chr7 (13 HSPs)
chr7 (56-107)||(46945764-46945815)
chr7 (237-299)||(529444-529506)
chr7 (238-299)||(10079265-10079326)
chr7 (60-107)||(425971-426018)
chr7 (237-304)||(3836604-3836671)
chr7 (257-304)||(29363610-29363657)
chr7 (261-304)||(30754449-30754492)
chr7 (238-304)||(1418502-1418568)
chr7 (239-292)||(5288195-5288248)
chr7 (259-304)||(7513663-7513708)
chr7 (257-294)||(8094408-8094445)
chr7 (267-304)||(40252044-40252081)
chr7 (238-294)||(30751602-30751658)
[»] chr4 (12 HSPs)
chr4 (157-218)||(35405946-35406008)
chr4 (237-304)||(46152858-46152925)
chr4 (237-300)||(49939876-49939938)
chr4 (258-304)||(1075561-1075607)
chr4 (60-106)||(17823012-17823058)
chr4 (150-218)||(7694019-7694088)
chr4 (237-282)||(22471356-22471401)
chr4 (275-304)||(27329997-27330026)
chr4 (62-107)||(47771871-47771916)
chr4 (151-266)||(50799989-50800106)
chr4 (237-301)||(3549479-3549543)
chr4 (238-302)||(50298598-50298662)
[»] chr6 (6 HSPs)
chr6 (242-294)||(35070398-35070450)
chr6 (56-107)||(7946023-7946074)
chr6 (160-303)||(2455812-2455958)
chr6 (239-300)||(7351596-7351657)
chr6 (62-107)||(17241384-17241429)
chr6 (257-305)||(324068-324116)
[»] scaffold0199 (1 HSPs)
scaffold0199 (237-294)||(6892-6949)


Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 32849041 - 32849342
Alignment:
Q  18 atatgttgcctatgcatgaaattctatttgagatttgatatttaggccttgtttggataagcatcttattttgcagcttatagcataagctattttaata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32849041 atatgttgcctatgcatgaaattctatttgagatttgatatttaggccttgtttggataagcatcttattttgcagcttatagcataagctattttaata 32849140  T
Q  118 ataaaagatgaaacaaaattaaactattttacgtatatgctatatgttgttttcttaagttatcctggagagcatatggaataaactgaaaacagcttat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32849141 ataaaagatgaaacaaaattaaactattttacgtatatgctatatgttgttttcttaagttatcctggagagcatatggaataaactgaaaacagcttat 32849240  T
Q  218 gcatgtcataagnnnnnnncataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaagttcaaacaggcc 317  Q
    |  |||||||||       |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32849241 gtgtgtcataagtttttttcataagttctcccaaacagcctcacaagtgcttatgatagtagataagcttaaataagtcaattcaaagttcaaacaggcc 32849340  T
Q  318 ct 319  Q
    ||    
T  32849341 ct 32849342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 337 - 408
Target Start/End: Original strand, 32849328 - 32849399
Alignment:
Q  337 gttcaaacaggcccttagatcatatatgatattgattaattgttaatatcctgtttttagaacttgatgatg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32849328 gttcaaacaggcccttagatcatatatgatattgattaattgttaatatcctgtttttagaacttgatgatg 32849399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 298
Target Start/End: Complemental strand, 17258946 - 17258810
Alignment:
Q  165 tgttttcttaagttatcctggagagcatatggaa-taaactgaaaacagcttatg--catgtcataagnnnnnnncataagttctcccaaacaacctcac 261  Q
    ||||||| |||  ||||||| ||||| |||| || ||| ||||||||||||||||  |||||||||||       |||| ||||||||||| ||  ||||    
T  17258946 tgttttcataaactatcctgaagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctattttcataggttctcccaaagaatgtcac 17258847  T
Q  262 aagtgcttatgatagtagataagcttaaataagccaa 298  Q
    ||||||||||| |||| |||||||| |||||||||||    
T  17258846 aagtgcttatgttagttgataagctcaaataagccaa 17258810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 305
Target Start/End: Complemental strand, 10125779 - 10125638
Alignment:
Q  167 ttttcttaagttatcctggagagcatatggaa-taaactgaaaacagcttatg--catgtcataagnnnnnnncataagttctcccaaacaacctcacaa 263  Q
    ||||| ||||||| | |||||||| |||| || ||| ||||||||| |||||   |||||||||||       ||||||||||| || ||||  ||||||    
T  10125779 ttttcataagttaccatggagagcttatgaaaataagctgaaaacaccttatcaacatgtcataagttgtttacataagttctctcagacaatgtcacaa 10125680  T
Q  264 gtgcttatgatagtagataagcttaaataagccaattcaaag 305  Q
    ||||| |||  |||||||||||||||||||||||||| ||||    
T  10125679 gtgctcatgtcagtagataagcttaaataagccaatttaaag 10125638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 39257362 - 39257322
Alignment:
Q  257 ctcacaagtgcttatgatagtagataagcttaaataagcca 297  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  39257362 ctcacaagtgcttatgttagtagataagcttaaataagcca 39257322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 304
Target Start/End: Complemental strand, 10771864 - 10771809
Alignment:
Q  249 caaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    ||||||| ||||||||||||||||  |||||||||||| |||||||||||| ||||    
T  10771864 caaacaatctcacaagtgcttatgccagtagataagctcaaataagccaatccaaa 10771809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 37588437 - 37588370
Alignment:
Q  151 tatatgctatatgttgttttcttaagttatcctggagagcatatggaa-taaactgaaaacagcttat 217  Q
    |||| |||||| ||||||||| |||||||| ||||||||| ||||||| ||| |||||||||||||||    
T  37588437 tataagctataagttgttttcataagttattctggagagcttatggaaataagctgaaaacagcttat 37588370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 293
Target Start/End: Original strand, 32172735 - 32172791
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataa 293  Q
    |||||| |||||||||| | |||||||||||||||| ||||| ||||||| ||||||    
T  32172735 cataagctctcccaaactatctcacaagtgcttatgctagtatataagctcaaataa 32172791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 499719 - 499652
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||||||||||||||||| ||| ||| |||||||||  ||||| |||||| ||||||| |||| ||||    
T  499719 cataagttctcccaaacagcctaacaggtgcttatgtcagtaggtaagctcaaataagtcaatccaaa 499652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 299
Target Start/End: Original strand, 10391435 - 10391486
Alignment:
Q  248 ccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaat 299  Q
    |||||||| |||||||||| |||||  || ||||||||||||||||||||||    
T  10391435 ccaaacaatctcacaagtgattatgccagcagataagcttaaataagccaat 10391486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 218
Target Start/End: Complemental strand, 15074821 - 15074758
Alignment:
Q  156 gctatatgttgttttcttaagttatcctggagagcatatggaa-taaactgaaaacagcttatg 218  Q
    |||||| ||||||||| |||||||| ||||| ||| ||||||| ||| ||||||||||||||||    
T  15074821 gctataagttgttttcataagttatactggaaagcttatggaaataagctgaaaacagcttatg 15074758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 304
Target Start/End: Complemental strand, 36542254 - 36542207
Alignment:
Q  257 ctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||| ||||||||||| ||||||||||||| ||| |||||||||||||    
T  36542254 ctcataagtgcttatgttagtagataagctcaaacaagccaattcaaa 36542207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 37526276 - 37526209
Alignment:
Q  151 tatatgctatatgttgttttcttaagttatcctggagagcatatggaa-taaactgaaaacagcttat 217  Q
    |||| |||||| ||||||||| |||||| | ||||||||| ||||||| ||| |||||||||||||||    
T  37526276 tataagctataagttgttttcataagttgttctggagagcttatggaaataagctgaaaacagcttat 37526209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 18543266 - 18543193
Alignment:
Q  158 tatatgttgttttcttaagttatcctggagagcatatggaataaactgaaaacagcttatg--catgtcataag 229  Q
    |||| ||||||||| |||| ||||||||||||| |||| ||||| ||||||||| || |||  |||||||||||    
T  18543266 tataagttgttttcataagctatcctggagagcttatgaaataagctgaaaacaactcatggacatgtcataag 18543193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 38105063 - 38105013
Alignment:
Q  57 atttaggccttgtttggataagcatcttattttgcagcttatagcataagc 107  Q
    |||| |||| ||||||||||| || |||||||||||||||||||| |||||    
T  38105063 atttgggccctgtttggataaacaacttattttgcagcttatagcgtaagc 38105013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 304
Target Start/End: Complemental strand, 41535071 - 41535025
Alignment:
Q  258 tcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||||||||||||||  ||||||| |||| |||||||||||||||||    
T  41535071 tcacaagtgcttatggcagtagatgagctcaaataagccaattcaaa 41535025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 293
Target Start/End: Complemental strand, 11095480 - 11095427
Alignment:
Q  240 aagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataa 293  Q
    |||||||| |||||||  ||||||||| |||||  |||||||||||||||||||    
T  11095480 aagttctctcaaacaatatcacaagtgtttatgtcagtagataagcttaaataa 11095427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 14331450 - 14331515
Alignment:
Q  239 taagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||||| | |||||||| ||||  ||||||||||| |||||||||||| ||||||| |||| ||||    
T  14331450 taagtttttccaaacaatctcaagagtgcttatgacagtagataagctcaaataagtcaatccaaa 14331515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 298
Target Start/End: Original strand, 15015926 - 15015986
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaa 298  Q
    ||||||||||||||||||  |||||||  |||||||  |||||||||||| |||||||||||    
T  15015926 cataagttctcccaaacagtctcacaaa-gcttatgtcagtagataagctcaaataagccaa 15015986  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 11615619 - 11615575
Alignment:
Q  260 acaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    ||||||| ||||| ||||||||||||| |||||||||||| ||||    
T  11615619 acaagtgtttatgttagtagataagctcaaataagccaatccaaa 11615575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 26004962 - 26004918
Alignment:
Q  260 acaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    ||||||||||||| ||||||||||||| ||||||| |||| ||||    
T  26004962 acaagtgcttatgctagtagataagctaaaataagtcaatccaaa 26004918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 26390867 - 26390799
Alignment:
Q  151 tatatgctatatgttgttttcttaagttatcctggagagcatatgg-aataaactgaaaacagcttatg 218  Q
    |||| |||||| | || |||| |||||||||||||||||| ||||| |||||  |||||||||||||||    
T  26390867 tataagctataagatggtttcctaagttatcctggagagcttatggaaataaggtgaaaacagcttatg 26390799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 165 - 304
Target Start/End: Original strand, 4560509 - 4560651
Alignment:
Q  165 tgttttcttaagttatcctggagagcatatggaa-taaactgaaaacagctta-tg-catgtcataagnnnnnnncataagttctcccaaacaacctcac 261  Q
    |||||||||||| ||||||  ||||| ||| ||| ||| |||||||||||||| || ||||| |||||       |||||||||| ||||||||||||||    
T  4560509 tgttttcttaaggtatcctcaagagcttatcgaaataatctgaaaacagcttactgacatgttataagttatttccataagttcttccaaacaacctcac 4560608  T
Q  262 aagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||||||||||  | |||||||||| ||||||| |||| ||||    
T  4560609 aagtgcttatgtcaatagataagctcaaataagtcaatccaaa 4560651  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 217
Target Start/End: Original strand, 4558743 - 4558858
Alignment:
Q  102 ataagctattttaataataaaagatgaaacaaaattaaactattttacgtatatgctatatgttgttttcttaagttatcctggagagcatatgg-aata 200  Q
    |||||||||||  |||||||||||| ||| ||| ||||| |||||| | ||||||||||| | ||||| | |||| |||||| |||||| ||||| ||||    
T  4558743 ataagctatttctataataaaagataaaataaagttaaattatttt-catatatgctataagctgtttccataagctatcctagagagcttatggaaata 4558841  T
Q  201 aactgaaaacagcttat 217  Q
    |||| |||||| |||||    
T  4558842 aactaaaaacaacttat 4558858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 221
Target Start/End: Original strand, 31862438 - 31862557
Alignment:
Q  102 ataagctattttaataataaaagatgaaacaaaattaaactattttacgtatatgctatatgttgttttcttaagttatcctggagagcatatg-gaata 200  Q
    ||||| ||||| ||||| ||||||| | | ||| | |||||||| | |||||| |||||| | ||||||| ||||||||||| |||||| ||||  ||||    
T  31862438 ataagttatttcaataacaaaagataatataaagtcaaactattct-cgtataagctataagatgttttcataagttatcctagagagcttatgaaaata 31862536  T
Q  201 aactgaaaacagcttatgcat 221  Q
    | |||||||||||||||||||    
T  31862537 agctgaaaacagcttatgcat 31862557  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 2487996 - 2487929
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    ||||||||||||||||||  ||||||||||||||||  ||||||| | || |||||||||||| ||||    
T  2487996 cataagttctcccaaacagtctcacaagtgcttatgtcagtagatgaactcaaataagccaatccaaa 2487929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 31884927 - 31884872
Alignment:
Q  238 ataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataa 293  Q
    ||||||| |||||||||  |||||||||||||||| ||||||||||||| ||||||    
T  31884927 ataagttttcccaaacactctcacaagtgcttatgctagtagataagctcaaataa 31884872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 3953885 - 3953945
Alignment:
Q  238 ataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaa 298  Q
    |||||||||||||||||   |||||||||||||||  |||||||| ||| |||||||||||    
T  3953885 ataagttctcccaaacagtttcacaagtgcttatgccagtagataggctcaaataagccaa 3953945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 7918769 - 7918713
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataa 293  Q
    |||||| |||||||||||  |||||||||| ||||| ||||||||||| ||||||||    
T  7918769 cataagctctcccaaacagtctcacaagtgtttatgctagtagataagtttaaataa 7918713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 297
Target Start/End: Original strand, 24326113 - 24326173
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagcca 297  Q
    |||||| |||||||||||  ||||||||||||||||  |||||||||||| |||| |||||    
T  24326113 cataagctctcccaaacagtctcacaagtgcttatgccagtagataagctcaaattagcca 24326173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 11376785 - 11376852
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||||||||||||||| |  ||||||||  |||||   |||||||||||| |||||||||||||||||    
T  11376785 cataagttctcccaaatagtctcacaagaacttatatcagtagataagctcaaataagccaattcaaa 11376852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 13652298 - 13652349
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagctta 288  Q
    |||||| ||| |||||||||||||||||||||||||  ||||||||| ||||    
T  13652298 cataagctcttccaaacaacctcacaagtgcttatgtgagtagataaactta 13652349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 13710941 - 13710992
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagctta 288  Q
    |||||| ||| |||||||||||||||||||||||||  ||||||||| ||||    
T  13710941 cataagctcttccaaacaacctcacaagtgcttatgtgagtagataaactta 13710992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 16162842 - 16162909
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||||||| || ||||||  |||||||||| ||||| |||||||||| || |||||||||||| ||||    
T  16162842 cataagttttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaa 16162909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 43045712 - 43045646
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||||| ||||| |||||  ||||||| | |||||| |||||||||||||||||||||||||| ||||    
T  43045712 cataagatctccaaaacagtctcacaaat-cttatgctagtagataagcttaaataagccaatccaaa 43045646  T

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Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 303
Target Start/End: Original strand, 43385725 - 43385788
Alignment:
Q  240 aagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaa 303  Q
    ||||||| |||||||  |||||| |||||||||  |||||||||||||| ||||| ||||||||    
T  43385725 aagttcttccaaacagtctcacaggtgcttatgccagtagataagcttagataagtcaattcaa 43385788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 299
Target Start/End: Original strand, 43504837 - 43504895
Alignment:
Q  241 agttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaat 299  Q
    |||||||| |||||  | |||||||||||| |  |||||||||||||||||||||||||    
T  43504837 agttctccgaaacagtcacacaagtgcttaagccagtagataagcttaaataagccaat 43504895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 1664451 - 1664508
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataag 294  Q
    |||||| |||||||||||  |||||||||| ||||| |||||||||| || |||||||    
T  1664451 cataagctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaataag 1664508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 2833530 - 2833481
Alignment:
Q  57 atttaggccttgtttggataagcatcttattttgcagcttatagcataag 106  Q
    ||||| ||| ||||||||||| |  |||||||||||||||||||||||||    
T  2833530 atttaagccatgtttggataaactgcttattttgcagcttatagcataag 2833481  T

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Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 276
Target Start/End: Original strand, 14242980 - 14243017
Alignment:
Q  239 taagttctcccaaacaacctcacaagtgcttatgatag 276  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  14242980 taagttctctcaaacaatctcacaagtgcttatgatag 14243017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 304
Target Start/End: Complemental strand, 29417593 - 29417532
Alignment:
Q  243 ttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    ||||| |||||| ||||||||||| |||||   || |||||||| |||||||||||||||||    
T  29417593 ttctctcaaacagcctcacaagtgtttatgtcggtcgataagctaaaataagccaattcaaa 29417532  T

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Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 31118910 - 31118853
Alignment:
Q  55 atatttaggccttgtttggataagcatcttattttgcagcttatagcataagctattt 112  Q
    |||||||  |||||||||||||| || |||| | ||||||||||||||||||| ||||    
T  31118910 atatttaaaccttgtttggataaacaacttaatgtgcagcttatagcataagccattt 31118853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 34551120 - 34551157
Alignment:
Q  158 tatatgttgttttcttaagttatcctggagagcatatg 195  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  34551120 tataagttgttttcttaagttatcctggagagcttatg 34551157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 304
Target Start/End: Original strand, 40158709 - 40158867
Alignment:
Q  149 cgtatatgctatatgttgttttcttaagttatcctggagagcatatggaataaa-ctgaaaacagcttatg--catgtcataagnnnnnnncataagttc 245  Q
    |||||| || ||| ||||||||| |||||||| ||||||||| |||| ||| || ||||||||| |||||   |||||||||||       |||||||||    
T  40158709 cgtataagcaataagttgttttcataagttattctggagagcttatgtaattaagctgaaaacaacttataaacatgtcataagctgttttcataagttc 40158808  T
Q  246 tcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
     ||||| ||  ||||||||| ||||||  |||||||| ||| |||||||||||| ||||    
T  40158809 ccccaatcagtctcacaagttcttatgtcagtagatatgctcaaataagccaatccaaa 40158867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 43530099 - 43530032
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    ||||||||||||||| ||  ||||||||||| |||| |||||||| |||| ||||||||||| |||||    
T  43530099 cataagttctcccaagcactctcacaagtgcatatgttagtagattagctcaaataagccaaatcaaa 43530032  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 12313362 - 12313322
Alignment:
Q  67 tgtttggataagcatcttattttgcagcttatagcataagc 107  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  12313362 tgtttggataaacatcttattttgcagcttatagtataagc 12313322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 18179217 - 18179161
Alignment:
Q  248 ccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||||||| || |||||||||||||  | ||||||||||||||||||||||| ||||    
T  18179217 ccaaacaaacttacaagtgcttatgtaactagataagcttaaataagccaatccaaa 18179161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 4350772 - 4350839
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    ||||||||||| ||||||| |||  |||||||||||  |||||| ||||| |||||||||||| ||||    
T  4350772 cataagttctctcaaacaatctcttaagtgcttatgtcagtagagaagctcaaataagccaatccaaa 4350839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 12313161 - 12313094
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    ||||| ||||||||||||| |||||||||||||||| |||| | |||| | |||||||| ||| ||||    
T  12313161 cataaattctcccaaacaatctcacaagtgcttatgctagtgggtaagatcaaataagctaatacaaa 12313094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 22878180 - 22878247
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||||| |||||||||||  ||||||||||||||||  ||| |||||||| ||||||| |||| ||||    
T  22878180 cataaggtctcccaaacagtctcacaagtgcttatgtcagtggataagctcaaataagtcaatccaaa 22878247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 43259917 - 43259984
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||||||| |||| ||||   ||||||||||||||| ||||||||||| | |||||||||||| ||||    
T  43259917 cataagttttcccgaacattgtcacaagtgcttatgctagtagataagttcaaataagccaatccaaa 43259984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 299
Target Start/End: Original strand, 25609898 - 25609940
Alignment:
Q  257 ctcacaagtgcttatgatagtagataagcttaaataagccaat 299  Q
    ||||||||| |||||| ||||||||||||| ||||||||||||    
T  25609898 ctcacaagttcttatgttagtagataagctcaaataagccaat 25609940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 32364718 - 32364652
Alignment:
Q  238 ataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    ||||| ||||||||||||  |||||| ||||||||||||||||||  || ||||||| |||| ||||    
T  32364718 ataagctctcccaaacaatttcacaaatgcttatgatagtagatattctcaaataagtcaatccaaa 32364652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 30990401 - 30990360
Alignment:
Q  263 agtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||||||||| ||||||||||||| |||||||||||| ||||    
T  30990401 agtgcttatgttagtagataagctcaaataagccaatccaaa 30990360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 31982381 - 31982438
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataag 294  Q
    |||||||||||||||| |   ||||| ||||||||| |||||| ||||||||||||||    
T  31982381 cataagttctcccaaatagtgtcacaggtgcttatgttagtaggtaagcttaaataag 31982438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 37276834 - 37276883
Alignment:
Q  245 ctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataag 294  Q
    ||||||||||  |||||||||||||||  |||||||||| ||||||||||    
T  37276834 ctcccaaacagtctcacaagtgcttatattagtagataaacttaaataag 37276883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 304
Target Start/End: Original strand, 787373 - 787481
Alignment:
Q  198 ataaactgaaaacagcttatg--catgtcataagnnnnnnncataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagc 295  Q
    |||| ||||||||||||||||  |||||||||||       ||||||||||| ||||||   |||||||||||||||  |||||||| |||  ||||| |    
T  787373 ataagctgaaaacagcttatggacatgtcataagctgttttcataagttctcacaaacagtgtcacaagtgcttatgccagtagatatgctcgaataatc 787472  T
Q  296 caattcaaa 304  Q
    |||| ||||    
T  787473 caatccaaa 787481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 15377858 - 15377910
Alignment:
Q  248 ccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaatt 300  Q
    ||||||| ||| |||| |||||||| ||||| ||||||| |||||||||||||    
T  15377858 ccaaacagccttacaattgcttatgttagtacataagctcaaataagccaatt 15377910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 318
Target Start/End: Complemental strand, 33319798 - 33319723
Alignment:
Q  240 aagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaagttcaaacaggccc 318  Q
    |||||||||||||||  |||||||   ||||||  |||||| ||||| |||||||||||| |||| | |||||||||||    
T  33319798 aagttctcccaaacagtctcacaa---cttatgccagtagacaagctcaaataagccaatccaaattccaaacaggccc 33319723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 304
Target Start/End: Original strand, 41057243 - 41057304
Alignment:
Q  243 ttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    ||||||||||||  ||||||||||||||||   ||||||||||| |||||||||||||||||    
T  41057243 ttctcccaaacagtctcacaagtgcttatgcatgtagataagctcaaataagccaattcaaa 41057304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 45590733 - 45590800
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||||| |||||||||||  |||||||||||||||| ||||||||||| | ||| ||| |||||||||    
T  45590733 cataagctctcccaaacagtctcacaagtgcttatgctagtagataagttcaaaaaagtcaattcaaa 45590800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 304
Target Start/End: Complemental strand, 49465787 - 49465586
Alignment:
Q  103 taagctattttaataataaaagatgaaacaaaattaaactattttacgtatatgctatatgttgttttcttaagttatcctggagagcatatggaa-taa 201  Q
    ||||||||||| |||| ||||||| ||| ||| ||||  | |||| |||||| |||| ||||||||||| |||| ||| ||||||| | ||||||| |||    
T  49465787 taagctatttttataacaaaagataaaataaagttaa--tttttttcgtata-gctaaatgttgttttcataagctatactggagaacttatggaaataa 49465691  T
Q  202 actgaaaacagcttatg--catgtcataagnnnnnnncataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaat 299  Q
     || |||| | || |||  ||||| |||||       |||||||||||| ||||||  ||||||||||||||| ||||| |||| || ||||||| ||||    
T  49465690 gcttaaaaaacctaatgaacatgtaataagctgttttcataagttctccgaaacaatatcacaagtgcttatggtagtaaataaactgaaataagtcaat 49465591  T
Q  300 tcaaa 304  Q
     ||||    
T  49465590 ccaaa 49465586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 50211817 - 50211874
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataag 294  Q
    ||||||||||| ||||||  || ||||||||||||| ||||||||||||| |||||||    
T  50211817 cataagttctctcaaacagtcttacaagtgcttatgttagtagataagctaaaataag 50211874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 282
Target Start/End: Complemental strand, 30573985 - 30573857
Alignment:
Q  157 ctatatgttgttttcttaagttatcctggagagcatatgga-ataaactgaaaacagcttatg--catgtcataagnnnnnnncataagttctcccaaac 253  Q
    ||||||| ||||||| |||| |||| ||||||||  ||| | |||| ||||||||||||||||  |||| |||||        ||||||||||| |||||    
T  30573985 ctatatgatgttttcataagctatcttggagagctgatgaacataagctgaaaacagcttatgaacatgccataatttgttttcataagttctcacaaac 30573886  T
Q  254 aacctcacaagtgcttatgatagtagata 282  Q
    || ||||||||||||||||  ||||||||    
T  30573885 aaactcacaagtgcttatgtcagtagata 30573857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 299
Target Start/End: Original strand, 22667492 - 22667547
Alignment:
Q  244 tctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaat 299  Q
    |||| ||||||  ||||||||||||||||  |||||||||||| ||||||||||||    
T  22667492 tctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataagccaat 22667547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 299
Target Start/End: Original strand, 22724131 - 22724186
Alignment:
Q  244 tctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaat 299  Q
    |||| ||||||  ||||||||||||||||  |||||||||||| ||||||||||||    
T  22724131 tctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataagccaat 22724186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 24158504 - 24158437
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||||| |||| ||||||   |||||||| ||||||  ||||||||||||||||||||||||| ||||    
T  24158504 cataagctctcgcaaacagtttcacaagtacttatgtcagtagataagcttaaataagccaatccaaa 24158437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 36189711 - 36189778
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||||||||  |||||||  |||||||||||||||  ||||| ||||||| ||||||| |||||||||    
T  36189711 cataagttcctccaaacagtctcacaagtgcttatactagtaaataagctcaaataagtcaattcaaa 36189778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 44014786 - 44014719
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||||||| || ||||||  |||||||||| ||||| |||||||||| || |||||||||||| ||||    
T  44014786 cataagttttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaa 44014719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 11253584 - 11253650
Alignment:
Q  238 ataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||| |||| |||||||  ||| |||||||||||| |||||||||| || ||||||| |||||||||    
T  11253584 ataaattctgccaaacagtctctcaagtgcttatgctagtagataatctcaaataagtcaattcaaa 11253650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 25459616 - 25459562
Alignment:
Q  239 taagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataa 293  Q
    |||| ||| |||||||| |||||||||||||||| |||| |||||||| ||||||    
T  25459616 taagctcttccaaacaatctcacaagtgcttatgctagttgataagctcaaataa 25459562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 106
Target Start/End: Original strand, 45554879 - 45554916
Alignment:
Q  69 tttggataagcatcttattttgcagcttatagcataag 106  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  45554879 tttggataaacatcttattttgtagcttatagcataag 45554916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 46434787 - 46434750
Alignment:
Q  62 ggccttgtttggataagcatcttattttgcagcttata 99  Q
    |||||||||||||||| || ||||||||||||||||||    
T  46434787 ggccttgtttggataaacaacttattttgcagcttata 46434750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 48387500 - 48387455
Alignment:
Q  62 ggccttgtttggataagcatcttattttgcagcttatagcataagc 107  Q
    |||||||||||||||| || ||||||||||| |||||| |||||||    
T  48387500 ggccttgtttggataaacaacttattttgcatcttataacataagc 48387455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 1125856 - 1125796
Alignment:
Q  138 aaactattttacgtatatgctatatgttgttttcttaagttatcctggagagcatatggaa 198  Q
    ||||| |||| | |||| ||||||  |||||||||||||||||| |||||||| |||||||    
T  1125856 aaactgtttttcatataagctataacttgttttcttaagttatcttggagagcttatggaa 1125796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 3622364 - 3622400
Alignment:
Q  258 tcacaagtgcttatgatagtagataagcttaaataag 294  Q
    ||||||||||||||  |||||||||||||||||||||    
T  3622364 tcacaagtgcttatactagtagataagcttaaataag 3622400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 27294435 - 27294495
Alignment:
Q  244 tctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||| ||||||  ||||||||||||||||| | ||||||| || || ||||||||||||||    
T  27294435 tctctcaaacagtctcacaagtgcttatgacaatagataaactcaagtaagccaattcaaa 27294495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 298
Target Start/End: Original strand, 37273141 - 37273277
Alignment:
Q  165 tgttttcttaagttatcctggagagcatatggaa-taaactgaaaacagcttatg--catgtcataagnnnnnnncataagttctcccaaacaacctcac 261  Q
    ||||||| |||| |||| |||||| | ||||||| |||  |||||||| ||||||  |||||||||||       |||||| |||||||||||  |||||    
T  37273141 tgttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctcac 37273240  T
Q  262 aagtgcttatgatagtagataagcttaaataagccaa 298  Q
     |||||||||| || || ||||| | |||||||||||    
T  37273241 cagtgcttatgctaataaataagttcaaataagccaa 37273277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 32958720 - 32958781
Alignment:
Q  238 ataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaat 299  Q
    ||||| ||||| ||| |||||||||||||||||||| |||||||||||| ||||||| ||||    
T  32958720 ataagctctccaaaataacctcacaagtgcttatgacagtagataagctcaaataagtcaat 32958781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 9507313 - 9507380
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||||| |||||||||||  ||||||| ||| |||| ||||||||||||| |||||||| ||||||||    
T  9507313 cataagctctcccaaacagtctcacaaatgcctatgctagtagataagctcaaataagcaaattcaaa 9507380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 297
Target Start/End: Complemental strand, 31517727 - 31517668
Alignment:
Q  238 ataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagcca 297  Q
    |||||||||||||||||  ||||||||||||||||  |||| ||||||| ||||||||||    
T  31517727 ataagttctcccaaacagtctcacaagtgcttatgccagtaaataagctcaaataagcca 31517668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 304
Target Start/End: Original strand, 6292580 - 6292641
Alignment:
Q  243 ttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    ||||||||||||| |||| |||||||||||  |||||||||||| ||||||| |||| ||||    
T  6292580 ttctcccaaacaatctcaaaagtgcttatgtcagtagataagctcaaataagtcaatccaaa 6292641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 299
Target Start/End: Complemental strand, 10199438 - 10199334
Alignment:
Q  197 aataaactgaaaacagcttatg--catgtcataagnnnnnnncataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataag 294  Q
    ||||| ||||||||| ||||||  |||||||||||       ||| |||||||||||| |   ||||||||||||||| ||||||||||||| |||||||    
T  10199438 aataagctgaaaacaacttatgaacatgtcataagctattttcatgagttctcccaaatagtgtcacaagtgcttatgttagtagataagctcaaataag 10199339  T
Q  295 ccaat 299  Q
     ||||    
T  10199338 tcaat 10199334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 48064181 - 48064229
Alignment:
Q  59 ttaggccttgtttggataagcatcttattttgcagcttatagcataagc 107  Q
    ||||||| ||||||||||| || |||| |||||||||||||||||||||    
T  48064181 ttaggccatgtttggataaacaacttaatttgcagcttatagcataagc 48064229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 2295179 - 2295245
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    ||||||||||||||||||  |||||||   ||||||  |||||||||||| |||||||||||||||||    
T  2295179 cataagttctcccaaacagtctcacaaaa-cttatgccagtagataagctcaaataagccaattcaaa 2295245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 6659782 - 6659829
Alignment:
Q  257 ctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||||||||||||||| ||||||||||||| ||||||| |||| ||||    
T  6659782 ctcacaagtgcttatgctagtagataagctaaaataagtcaatccaaa 6659829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 7252608 - 7252541
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    ||||||||||||||||||   || ||||| |||||| |||||||| |||| |||||||| ||||||||    
T  7252608 cataagttctcccaaacagtttctcaagtacttatgttagtagattagctcaaataagctaattcaaa 7252541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 304
Target Start/End: Original strand, 13037965 - 13038008
Alignment:
Q  261 caagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    ||||||||||||||||| |||| ||| |||||||||||||||||    
T  13037965 caagtgcttatgatagtggatatgctcaaataagccaattcaaa 13038008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 15581347 - 15581394
Alignment:
Q  248 ccaaacaacctcacaagtgcttatgatagtagataagcttaaataagc 295  Q
    |||||||| ||||||||||||||||  |||||||||||| ||||||||    
T  15581347 ccaaacaatctcacaagtgcttatgtcagtagataagctaaaataagc 15581394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 18327134 - 18327067
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||||||||| ||||| |   ||| |||||||||||| |||||||||||| |||||||||||| ||||    
T  18327134 cataagttcttccaaatagtgtcaaaagtgcttatgacagtagataagctcaaataagccaatccaaa 18327067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 32515429 - 32515374
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaata 292  Q
    |||||| |||||||||||  |||||||||||||||| |||||||||| || |||||    
T  32515429 cataagctctcccaaacagtctcacaagtgcttatgttagtagataaactcaaata 32515374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 49517151 - 49517218
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||||| ||||||||||||   |||||| ||||||  ||||||||||| ||||||||| |||||||||    
T  49517151 cataagctctcccaaacaaaaccacaagcgcttatactagtagataagtttaaataagtcaattcaaa 49517218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 304
Target Start/End: Original strand, 1730962 - 1731008
Alignment:
Q  258 tcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    ||||||||||||||| | ||||||||||||| |||||||||| ||||    
T  1730962 tcacaagtgcttatggttgtagataagcttatataagccaatccaaa 1731008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 2194526 - 2194473
Alignment:
Q  58 tttaggccttgtttggataagcatcttattttgcagcttatagcataagctattt 112  Q
    |||||||| ||||||||||| || |||| |||||||||||| |||||||||||||    
T  2194526 tttaggccctgtttggataaacagcttaatttgcagcttat-gcataagctattt 2194473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 23373300 - 23373234
Alignment:
Q  238 ataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    ||||| |||||||||||| |||||||||||||||   |||||| ||| | ||||||| |||||||||    
T  23373300 ataagctctcccaaacaatctcacaagtgcttatatcagtagacaagttcaaataagtcaattcaaa 23373234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 295
Target Start/End: Original strand, 2832075 - 2832112
Alignment:
Q  258 tcacaagtgcttatgatagtagataagcttaaataagc 295  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  2832075 tcacaagtgcttatgctagtagataagctcaaataagc 2832112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 5082917 - 5082974
Alignment:
Q  247 cccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||||||| | |||||||||||||| | |||||||||| | |||||||||||| ||||    
T  5082917 cccaaacagcttcacaagtgcttataaaagtagataagttcaaataagccaatccaaa 5082974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 15709933 - 15709977
Alignment:
Q  239 taagttctcccaaacaacctcacaagtgcttatgatagtagataa 283  Q
    ||||||||||||||||  |||| ||||||||||| ||||||||||    
T  15709933 taagttctcccaaacagtctcaaaagtgcttatgctagtagataa 15709977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 301
Target Start/End: Complemental strand, 19462755 - 19462691
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattc 301  Q
    |||||||||||||||| |  | |||||||  |||||||  |||||||||||||||||| ||||||    
T  19462755 cataagttctcccaaagagtcccacaagttgttatgatgctagataagcttaaataagtcaattc 19462691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 21002248 - 21002304
Alignment:
Q  248 ccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||||||  ||||||||| ||||||  |||||||||||| |||||||||||| ||||    
T  21002248 ccaaacagtctcacaagttcttatgcaagtagataagctcaaataagccaatccaaa 21002304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 26184767 - 26184822
Alignment:
Q  177 ttatcctggagagcatatgg-aataaactgaaaacagcttatg--catgtcataag 229  Q
    |||||||||||||| ||||| ||||| ||||||||||||||||  |||||||||||    
T  26184767 ttatcctggagagcttatggaaataatctgaaaacagcttatggacatgtcataag 26184822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 33527321 - 33527281
Alignment:
Q  67 tgtttggataagcatcttattttgcagcttatagcataagc 107  Q
    ||||||||||| || |||||||||||||||| |||||||||    
T  33527321 tgtttggataaacagcttattttgcagcttagagcataagc 33527281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 35017667 - 35017726
Alignment:
Q  239 taagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaat 299  Q
    |||||||||| |||||| |||||||||| |||||  | |||||||||| ||||||||||||    
T  35017667 taagttctcc-aaacaatctcacaagtgtttatgccaatagataagctcaaataagccaat 35017726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 35058946 - 35058906
Alignment:
Q  67 tgtttggataagcatcttattttgcagcttatagcataagc 107  Q
    ||||||||||| || ||||||||||| ||||||||||||||    
T  35058946 tgtttggataaacagcttattttgcaacttatagcataagc 35058906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 37241801 - 37241742
Alignment:
Q  244 tctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    ||||| |||||| ||| ||||||||||||  |||||||||||||||||||| |||| ||||    
T  37241801 tctcctaaacaatctcgcaagtgcttatgc-agtagataagcttaaataagtcaatccaaa 37241742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 46945764 - 46945815
Alignment:
Q  56 tatttaggccttgtttggataagcatcttattttgcagcttatagcataagc 107  Q
    |||||||||||||||||||||| || |||| ||||||||||||||| |||||    
T  46945764 tatttaggccttgtttggataaacaacttagtttgcagcttatagcttaagc 46945815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 529444 - 529506
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaat 299  Q
    |||||||||||||||| | ||||||||||| |||||  |||||||||||| ||||||| ||||    
T  529444 cataagttctcccaaatagcctcacaagtgtttatgccagtagataagctcaaataagtcaat 529506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 10079326 - 10079265
Alignment:
Q  238 ataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaat 299  Q
    ||||| ||||||||||||||||| ||||| ||||| | ||| ||||||| ||||||||||||    
T  10079326 ataagctctcccaaacaacctcataagtgtttatgctcgtaaataagctcaaataagccaat 10079265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 426018 - 425971
Alignment:
Q  60 taggccttgtttggataagcatcttattttgcagcttatagcataagc 107  Q
    |||||| |||||||||||  | ||||||||||||||||||||||||||    
T  426018 taggccctgtttggataaataacttattttgcagcttatagcataagc 425971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 3836671 - 3836604
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    ||||||||||||||||||   ||||||||||||| |  |||||||||||| ||||||| |||| ||||    
T  3836671 cataagttctcccaaacagtttcacaagtgcttaagccagtagataagctcaaataaggcaatccaaa 3836604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 29363610 - 29363657
Alignment:
Q  257 ctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||||||||||||||| ||||||||||| | |||||||||||| ||||    
T  29363610 ctcacaagtgcttatgttagtagataagttcaaataagccaatccaaa 29363657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 304
Target Start/End: Complemental strand, 30754492 - 30754449
Alignment:
Q  261 caagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||||||||||||||||||| ||| ||||||||| |||||||||    
T  30754492 caagtgcttatgatagtagaaaagtttaaataagtcaattcaaa 30754449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 1418502 - 1418568
Alignment:
Q  238 ataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    ||||| |||| |||||| ||||| |||||||||||  |||||||||||| ||||||| |||| ||||    
T  1418502 ataagctctcacaaacagcctcataagtgcttatgccagtagataagctcaaataagtcaatccaaa 1418568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 5288195 - 5288248
Alignment:
Q  239 taagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaata 292  Q
    ||||||||||||||||  |||| ||||||||||| |||||||| |||| |||||    
T  5288195 taagttctcccaaacagtctcataagtgcttatgctagtagattagctcaaata 5288248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 304
Target Start/End: Original strand, 7513663 - 7513708
Alignment:
Q  259 cacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    ||||||||||||||  |||||||||||| ||||||| |||||||||    
T  7513663 cacaagtgcttatgccagtagataagctcaaataagtcaattcaaa 7513708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 8094408 - 8094445
Alignment:
Q  257 ctcacaagtgcttatgatagtagataagcttaaataag 294  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  8094408 ctcacaagtgcttatgctagtagataagctcaaataag 8094445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 40252081 - 40252044
Alignment:
Q  267 cttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  40252081 cttatgctagtagataagctcaaataagccaattcaaa 40252044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 30751602 - 30751658
Alignment:
Q  238 ataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataag 294  Q
    ||||| |||||||||||  | ||||||||||||||  |||||||||| |||||||||    
T  30751602 ataagctctcccaaacagtcgcacaagtgcttatgtcagtagataagtttaaataag 30751658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 35405946 - 35406008
Alignment:
Q  157 ctatatgttgttttcttaagttatcctggagagcatatggaa-taaactgaaaacagcttatg 218  Q
    ||||| |||||||||  ||||||||||||||||| ||||||| ||| ||||||||||||||||    
T  35405946 ctataggttgttttcaaaagttatcctggagagcttatggaagtaagctgaaaacagcttatg 35406008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 46152858 - 46152925
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    |||||| |||||||||||  ||||| | ||||||||| ||||||||| ||| ||||| ||||||||||    
T  46152858 cataagctctcccaaacattctcacgattgcttatgacagtagataaccttgaataatccaattcaaa 46152925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 300
Target Start/End: Complemental strand, 49939938 - 49939876
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaatt 300  Q
    |||||||||| ||||| |  |||||||  ||||||| |||||||||||||||||||||||||||    
T  49939938 cataagttcttccaaatagtctcacaaa-gcttatgctagtagataagcttaaataagccaatt 49939876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 304
Target Start/End: Original strand, 1075561 - 1075607
Alignment:
Q  258 tcacaagtgcttatgatagtagataagcttaaataagccaattcaaa 304  Q
    ||||||||| |||||  |||||||||||| |||||||||||||||||    
T  1075561 tcacaagtgtttatgccagtagataagctcaaataagccaattcaaa 1075607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 17823012 - 17823058
Alignment:
Q  60 taggccttgtttggataagcatcttattttgcagcttatagcataag 106  Q
    |||||||||||||||||| || |||| ||||||||| ||||||||||    
T  17823012 taggccttgtttggataaacagcttaatttgcagctcatagcataag 17823058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 7694088 - 7694019
Alignment:
Q  150 gtatatgctatatgttgttttcttaagttatcctggagagcatatgg-aataaactgaaaacagcttatg 218  Q
    ||||| |||||| | ||||||| |||||||||||||||||  ||||| ||||| ||||||||| ||||||    
T  7694088 gtataagctataagctgttttcataagttatcctggagagtttatggaaataagctgaaaacaacttatg 7694019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 22471356 - 22471401
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagata 282  Q
    ||||||||||||||||||  ||||||||||||||||  ||||||||    
T  22471356 cataagttctcccaaacagtctcacaagtgcttatgtcagtagata 22471401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 304
Target Start/End: Complemental strand, 27330026 - 27329997
Alignment:
Q  275 agtagataagcttaaataagccaattcaaa 304  Q
    ||||||||||||||||||||||||||||||    
T  27330026 agtagataagcttaaataagccaattcaaa 27329997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 47771871 - 47771916
Alignment:
Q  62 ggccttgtttggataagcatcttattttgcagcttatagcataagc 107  Q
    |||| ||||||||||| || ||||||||| ||||||||||||||||    
T  47771871 ggccctgtttggataaacagcttattttggagcttatagcataagc 47771916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 266
Target Start/End: Complemental strand, 50800106 - 50799989
Alignment:
Q  151 tatatgctatatgttgttttcttaagttatcctggagagcatatggaataaactgaaaacagcttatg--catgtcataagnnnnnnncataagttctcc 248  Q
    |||| |||||| | |||||||||||| |||| |||||| | |  | ||||| |||||||||||||||   |||||||||||       ||| ||||||||    
T  50800106 tataagctataagctgttttcttaagctatcatggagaactttggaaataagctgaaaacagcttatagacatgtcataagttgtttacattagttctcc 50800007  T
Q  249 caaacaacctcacaagtg 266  Q
    ||||||| ||||||||||    
T  50800006 caaacaatctcacaagtg 50799989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 301
Target Start/End: Complemental strand, 3549543 - 3549479
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattc 301  Q
    ||||||||||| ||||||  |||| |||||||||||  | ||||||| || ||||||||||||||    
T  3549543 cataagttctctcaaacagtctcataagtgcttatgccaatagataaactaaaataagccaattc 3549479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 50298598 - 50298662
Alignment:
Q  238 ataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaattca 302  Q
    ||||||| | |||||||  ||||||||||||||||  |||||||||||| ||||||  |||||||    
T  50298598 ataagtttttccaaacagtctcacaagtgcttatgtcagtagataagctaaaataaatcaattca 50298662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 35070450 - 35070398
Alignment:
Q  242 gttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataag 294  Q
    |||||||||||||  | |||||||||||||| ||||||||||||| |||||||    
T  35070450 gttctcccaaacagtcccacaagtgcttatgttagtagataagctcaaataag 35070398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 7946074 - 7946023
Alignment:
Q  56 tatttaggccttgtttggataagcatcttattttgcagcttatagcataagc 107  Q
    |||||| ||| ||||||||||| || ||||||||| ||||||||||||||||    
T  7946074 tatttaagccctgtttggataaacaacttattttgtagcttatagcataagc 7946023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 303
Target Start/End: Original strand, 2455812 - 2455958
Alignment:
Q  160 tatgttgttttcttaagttatcctggagagcatatggaa-taaactgaaaacagcttatg--catgtcataagnnnnnnncataagttctcccaaacaac 256  Q
    |||||| ||||| |||| |||| |||||||| ||||||| |||  |||||| || |||||  |||||||||||       |||||| ||| | ||||||     
T  2455812 tatgttattttcataagctatcttggagagcttatggaaataagttgaaaatagtttatgggcatgtcataagttgtttccataagctcttctaaacaat 2455911  T
Q  257 ctcacaagtgcttatgatagtagataagcttaaataagccaattcaa 303  Q
    ||| ||||||||||||   ||||||||||| ||||||| ||||||||    
T  2455912 ctcgcaagtgcttatgccggtagataagctcaaataagtcaattcaa 2455958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 300
Target Start/End: Complemental strand, 7351657 - 7351596
Alignment:
Q  239 taagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataagccaatt 300  Q
    |||||||||  |||||| ||||||||||||||||  ||||||||| || ||||||| |||||    
T  7351657 taagttctcataaacaatctcacaagtgcttatgtcagtagataaactcaaataagtcaatt 7351596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 17241429 - 17241384
Alignment:
Q  62 ggccttgtttggataagcatcttattttgcagcttatagcataagc 107  Q
    |||| |||||||||||||| | ||||| ||||||||||||||||||    
T  17241429 ggccctgtttggataagcaacatatttggcagcttatagcataagc 17241384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 324068 - 324116
Alignment:
Q  257 ctcacaagtgcttatgatagtagataagcttaaataagccaattcaaag 305  Q
    ||||||| |||||||| |||| |||||| | ||||||||||||||||||    
T  324068 ctcacaaatgcttatgctagttgataagttcaaataagccaattcaaag 324116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 6892 - 6949
Alignment:
Q  237 cataagttctcccaaacaacctcacaagtgcttatgatagtagataagcttaaataag 294  Q
    |||||| |||||||||||  |||||||||| ||||| |||||||||| || |||||||    
T  6892 cataagctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaataag 6949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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