View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7285_high_1 (Length: 548)
Name: NF7285_high_1
Description: NF7285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7285_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 84 - 537
Target Start/End: Original strand, 28333142 - 28333599
Alignment:
| Q |
84 |
ttcaaactcaccagacataatccaaaataacaacaacaacccacaagaactacttgcacctgctgtaaccgaagatgatctcgctcatctagcttctata |
183 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
28333142 |
ttcaaactcaccagacataatccaaaataataacaacaacctacaagaactacttgcacctgctgtaaccaaagatgatctcgcttatctagcttctata |
28333241 |
T |
|
| Q |
184 |
aatagttattctcgtcaggtggggattgattccccacctcataccaattgcttatgctcccaacgtcgtgtacttggtagttatcgatttttcacggaag |
283 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28333242 |
aatagttattctcgtcaggtggggcttgattccccacctcataccaattgcttatgctcccaacgtcgtgtacttggtagttatcgatttttcaccgaag |
28333341 |
T |
|
| Q |
284 |
aagaagaagatgatataatttttaatggctggtgatatagtctccatagtcgtcgtcttggtttggtttggtttattattatgctt----aatgaatgaa |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||| |
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| T |
28333342 |
aagaagaagatgatataatttttaatggctggtgatatagtctccatagtcgtcatcttggtttgatttggtttattattatgcttaatgaatgaatgaa |
28333441 |
T |
|
| Q |
380 |
tgaatacttttcattctcaatgtgtttattatgtactgtatatctctttaagaagcaactcaaactctgttgattatacttttaattataattattctct |
479 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
28333442 |
tgaatactttacattctcaatgtgtttattatgtactgtatatctctttaagaagcaactccaactctgttgattatacttataattataattattctct |
28333541 |
T |
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| Q |
480 |
ttatttaatatgcctgttgatatagtctccttggtttaatttttattttacgtgtgtg |
537 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28333542 |
ttatttaatatgcctgttgatatagtctccttagtttaatttttattttacgtgtgtg |
28333599 |
T |
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