View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7285_low_2 (Length: 376)
Name: NF7285_low_2
Description: NF7285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7285_low_2 |
 | |
|
| [»] scaffold0376 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 20478047 - 20478404
Alignment:
| Q |
1 |
tcatggtaagcaacggtacgtctatccttcttgcttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20478047 |
tcatggtaagcaacggtacgtctatccttcttgcttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcct |
20478146 |
T |
|
| Q |
101 |
ctgtgacatgtgcttcttcagttcttgcagctatcagagcagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaagggatgcaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20478147 |
ctgtgacatgtgcttcttcagttcttgcagctatcagagcagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaagggatgcaag |
20478246 |
T |
|
| Q |
201 |
cttatgtgaataatatgaaggctcctggtcaagtttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgtt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
20478247 |
cttatgtgaataatatgaaggctcctggtcaagtttgatccttttcaagtaaatctgaaatatctggtcacgacccttaatgtcgggtttatcaattgtt |
20478346 |
T |
|
| Q |
301 |
atttggcggtcaaaacgccccggtctaagtaaggctttgtctaatacatcaggtctat |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20478347 |
atttggcggtcaaaacgccccggtctaagtaaggctttgtctaatacatcaggtctat |
20478404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 38513528 - 38513885
Alignment:
| Q |
1 |
tcatggtaagcaacggtacgtctatccttcttgcttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcct |
100 |
Q |
| |
|
|||||||||||||| || ||||| | | ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
38513528 |
tcatggtaagcaacagtgcgtctttgcagcttacttattaccctgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcgaaatgatcat |
38513627 |
T |
|
| Q |
101 |
ctgtgacatgtgcttcttcagttcttgcagctatcagagcagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaagggatgcaag |
200 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38513628 |
gtgtgacgtgtgcttcttcagtccttgcagcaatcagagcagcttcattgcaaacattagcaatatccgctccagcaaatcctggagtaagggatgcaag |
38513727 |
T |
|
| Q |
201 |
cttatgtgaataatatgaaggctcctggtcaagtttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| || ||||| ||||||||||||||| |
|
|
| T |
38513728 |
cttatgtgaataatatgaaggctcgtggtcaagtttgatccctttcaagtaaatctgaaatatctggtcacgacctttgatgtcaggtttatcaattgtt |
38513827 |
T |
|
| Q |
301 |
atttggcggtcaaaacgccccggtctaagtaaggctttgtctaatacatcaggtctat |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38513828 |
atttggcggtcaaaacgccccggtctaagtagggctttgtctaatacatcaggtctat |
38513885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 4 - 358
Target Start/End: Complemental strand, 29728887 - 29728533
Alignment:
| Q |
4 |
tggtaagcaacggtacgtctatccttcttgcttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcctctg |
103 |
Q |
| |
|
|||||||||| ||||| || |||| ||| ||||||||| |||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||| || |
|
|
| T |
29728887 |
tggtaagcaattgtacgcctttcctgcttacttattacccggttcttcttctctaaaccgccaatgattctatcaatagctgcctcgaaatgatccattg |
29728788 |
T |
|
| Q |
104 |
tgacatgtgcttcttcagttcttgcagctatcagagcagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaagggatgcaagctt |
203 |
Q |
| |
|
|||| |||||||||||||| || ||||| || |||||||||||||||||||| |||| ||| || ||||||| ||||||| ||||||||||||||||| | |
|
|
| T |
29728787 |
tgacttgtgcttcttcagtcctcgcagcaattagagcagcttcattgcaaacattagaaatatctgctccagtaaatccttgagtaagggatgcaagcct |
29728688 |
T |
|
| Q |
204 |
atgtgaataatatgaaggctcctggtcaagtttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatt |
303 |
Q |
| |
|
| |||| |||| |||| || ||| |||||||||| | |||||||||||||||||||||||| ||||||| || |||||||||||||||| ||||||| |
|
|
| T |
29728687 |
ttttgaaaaatacaaaggttcgtgggaaagtttgatcttgttcaagtaaatctgaaatatctggtcacgacctttgatgtcgggtttatcaactgttatt |
29728588 |
T |
|
| Q |
304 |
tggcggtcaaaacgccccggtctaagtaaggctttgtctaatacatcaggtctat |
358 |
Q |
| |
|
||||| || |||||||| || || || | ||||| ||||||| ||||||||||| |
|
|
| T |
29728587 |
tggcgatcgaaacgcccaggcctgagcagagctttatctaatatatcaggtctat |
29728533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 3413 - 3056
Alignment:
| Q |
1 |
tcatggtaagcaacggtacgtctatccttcttgcttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcct |
100 |
Q |
| |
|
||||||||||||| ||||| || |||| ||| ||||||||| ||||||||||||| ||||| ||||||| ||||||||| |||||||| |||||||||| |
|
|
| T |
3413 |
tcatggtaagcaatagtacgcctttcctgcttacttattaccatgttcttcttctctaaaccgccaatgaccctatcaatggctgcctcgaaatgatcct |
3314 |
T |
|
| Q |
101 |
ctgtgacatgtgcttcttcagttcttgcagctatcagagcagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaagggatgcaag |
200 |
Q |
| |
|
||||||||| |||| ||||| |||||||| ||||||||||||||||||||||| |||||||| ||| |||||| |||||||||||||||||||||||| |
|
|
| T |
3313 |
tcgtgacatgttcttcatcagtccttgcagcaatcagagcagcttcattgcaaacattagcaatctccactccagaaaatcctggagtaagggatgcaag |
3214 |
T |
|
| Q |
201 |
cttatgtgaataatatgaaggctcctggtcaagtttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgtt |
300 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||| || ||||||||||| ||||||||||| | ||||| || ||||||||||| ||||||||| |
|
|
| T |
3213 |
tctatgtgaataatatgaaggctcattgtcaagtttgattctgttcaagtaaatttgaaatatctgatcgcgacctttgatgtcgggtttgtcaattgtt |
3114 |
T |
|
| Q |
301 |
atttggcggtcaaaacgccccggtctaagtaaggctttgtctaatacatcaggtctat |
358 |
Q |
| |
|
|||||||||||||||||||| ||||||| || |||||||||||||||||||| ||||| |
|
|
| T |
3113 |
atttggcggtcaaaacgccctggtctaactagggctttgtctaatacatcagctctat |
3056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 45285181 - 45284926
Alignment:
| Q |
1 |
tcatggtaagcaacggtacgtctatccttcttgcttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcct |
100 |
Q |
| |
|
||||||||||||||||| || || | || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45285181 |
tcatggtaagcaacggttcgcctgtgctgcttgcttattaccttgttcttcttctccaaaccaccgatgatcctatcaatagctgcctcaaaatgatcct |
45285082 |
T |
|
| Q |
101 |
ctgtgacatgtgcttcttcagttcttgcagctatcagagcagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaagggatgcaag |
200 |
Q |
| |
|
|||| |||||| ||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
45285081 |
ttgtggcatgtgtttcttcagtacttgcagcaatcagagcagcttcattgcaaacattagcaatgtctgatccagcaaatcatggagtaagggatgcaag |
45284982 |
T |
|
| Q |
201 |
cttatgtgaataatatgaaggctcctggtcaagtttgatccttttcaagtaaatct |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45284981 |
cttatgtgaataatatgaaggctcctggtcaagtttaatccttttcaagtaaatct |
45284926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 296 - 358
Target Start/End: Complemental strand, 45284926 - 45284864
Alignment:
| Q |
296 |
ttgttatttggcggtcaaaacgccccggtctaagtaaggctttgtctaatacatcaggtctat |
358 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
45284926 |
ttgttatttggaggtcaaaacgccccggcctaagtagggctttgtctaatacatcaggtctat |
45284864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 39 - 358
Target Start/End: Complemental strand, 24004449 - 24004130
Alignment:
| Q |
39 |
taccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcctctgtgacatgtgcttcttcagttcttgcagctatcaga |
138 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||| || | ||| ||||| |||||||| |||||| |
|
|
| T |
24004449 |
taccctgttcttcttctccaaaccaccaatgatcctatcgatagctgcctcgaaatgatccattgtgacttgcgattcatcagtccttgcagcaatcaga |
24004350 |
T |
|
| Q |
139 |
gcagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaagggatgcaagcttatgtgaataatatgaaggctcctggtcaagtttga |
238 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||| | || ||||||||||||||||| ||||||||||||| |
|
|
| T |
24004349 |
gcagcttcattgcaaacattagcaatgtctgctccagcaaatcctggagtaagggctgcaagcctctgagaataatatgaaggctcgtggtcaagtttga |
24004250 |
T |
|
| Q |
239 |
tccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatttggcggtcaaaacgccccggtctaagtaaggcttt |
338 |
Q |
| |
|
| ||||||| |||||||||||||||||| ||||||| |||||||||||| |||||||| ||| ||||||||||||||| || ||||||||||| || |
|
|
| T |
24004249 |
tttttttcaaataaatctgaaatatctggtcacgacctttaatgtcgggtacatcaattgatatcgtgcggtcaaaacgcccaggcctaagtaaggcgtt |
24004150 |
T |
|
| Q |
339 |
gtctaatacatcaggtctat |
358 |
Q |
| |
|
|||||||| ||||| ||||| |
|
|
| T |
24004149 |
gtctaatatatcagctctat |
24004130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 4 - 358
Target Start/End: Complemental strand, 16838362 - 16838008
Alignment:
| Q |
4 |
tggtaagcaacggtacgtctatccttcttgcttattaccttgttcttcttctccaaaccaccaatgatcctatcaatagctgcctcaaaatgatcctctg |
103 |
Q |
| |
|
||||||||||||||||| || |||| ||| |||||||| |||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||| || |
|
|
| T |
16838362 |
tggtaagcaacggtacgcctttcctgcttacttattacacggttcttcttctctaaaccgccaatgattctatcaatagctgcctcgaaatgatccattg |
16838263 |
T |
|
| Q |
104 |
tgacatgtgcttcttcagttcttgcagctatcagagcagcttcattgcaaacgttagcaatgtccgctccagcaaatcctggagtaagggatgcaagctt |
203 |
Q |
| |
|
|||| |||||||||||||| || ||||| || |||||||||||||| ||||| |||||||| || ||||||| ||||||| ||||||||||||||||| | |
|
|
| T |
16838262 |
tgacttgtgcttcttcagtcctcgcagcaattagagcagcttcattacaaacattagcaatctctgctccagtaaatccttgagtaagggatgcaagcct |
16838163 |
T |
|
| Q |
204 |
atgtgaataatatgaaggctcctggtcaagtttgatccttttcaagtaaatctgaaatatctggccacgacccttaatgtcgggtttatcaattgttatt |
303 |
Q |
| |
|
| |||| |||| |||| || ||| |||||||||| | |||||||||||||||||||||||| ||||||| || ||||||||||||||| ||||||| |
|
|
| T |
16838162 |
ttttgaaaaatacaaaggttcgtgggaaagtttgatcttgttcaagtaaatctgaaatatctggtcacgacctttgatgtcgggtttatcagctgttatt |
16838063 |
T |
|
| Q |
304 |
tggcggtcaaaacgccccggtctaagtaaggctttgtctaatacatcaggtctat |
358 |
Q |
| |
|
||||| || |||||||| | || || | ||||| ||||||| ||||||||||| |
|
|
| T |
16838062 |
tggcgatcgaaacgcccatgcctgagcagagctttatctaatatatcaggtctat |
16838008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University