View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7285_low_3 (Length: 375)

Name: NF7285_low_3
Description: NF7285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7285_low_3
NF7285_low_3
[»] chr2 (1 HSPs)
chr2 (18-375)||(17232433-17232790)
[»] chr8 (2 HSPs)
chr8 (268-372)||(22768616-22768719)
chr8 (18-71)||(45204803-45204856)
[»] chr3 (3 HSPs)
chr3 (186-268)||(23289757-23289839)
chr3 (268-364)||(21646226-21646321)
chr3 (268-312)||(21624469-21624513)
[»] chr1 (5 HSPs)
chr1 (18-182)||(15007625-15007779)
chr1 (18-182)||(15021742-15021896)
chr1 (18-182)||(15028860-15029014)
chr1 (107-171)||(1251415-1251479)
chr1 (18-70)||(1251331-1251383)


Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 17232433 - 17232790
Alignment:
Q  18 tcattttataggtgtgatgttttaagctatggggtcatcttatgggagctctttgccaagcaaaaacactgacattatgaatccgacaatgaatccatac 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17232433 tcattttataggtgtgatgttttaagctatggggtcatcttatgggagctctttgccaagcaaaaacactgacattatgaatccgacaatgaatccatac 17232532  T
Q  118 cgagttatttatcatgttggcgaggaggatggtcgtctggacattccagacaatatggaccctgacattcaataacagaatcataggcgaaagggtaacc 217  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17232533 cgagttatttatcatgttggcgaggaggatggttgtctggacattccagacaatatggaccctgacattcaataacagaatcataggcgaaagggtaacc 17232632  T
Q  218 tttctaagttcatcccagagcttgtagcagtttgcattatgaggaccatgttaccagatgattgcacactaacatgagaatatgaaccataagaaagggg 317  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17232633 tttctaagttcatcccagagcttgtagtagtttgcattatgaggaccatgttaccagatgattgcacactaacatgagaatatgaaccataagaaagggg 17232732  T
Q  318 gatcacttccccatatggtacaaattgactctatcggatcaggcacagcgatgccctt 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17232733 gatcacttccccatatggtacaaattgactctatcggatcaggcacagcgatgccctt 17232790  T

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Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 268 - 372
Target Start/End: Original strand, 22768616 - 22768719
Alignment:
Q  268 ttaccagatgattgcacactaacatgagaatatgaaccataagaaagggggatcacttccccatatggtacaaattgactctatcggatcaggcacagcg 367  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||| ||||||||||||| | ||| ||||||||||||| |    
T  22768616 ttaccagatgattgcacactaacatgagagtatgaaccataagaaa-ggggatcgcttccccatctggtacaaattgattgtattggatcaggcacagtg 22768714  T
Q  368 atgcc 372  Q
    |||||    
T  22768715 atgcc 22768719  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 45204803 - 45204856
Alignment:
Q  18 tcattttataggtgtgatgttttaagctatggggtcatcttatgggagctcttt 71  Q
    ||||||| ||||||||||||||| |||||||||||||| |||||||||||||||    
T  45204803 tcattttgtaggtgtgatgtttttagctatggggtcatattatgggagctcttt 45204856  T

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Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 186 - 268
Target Start/End: Original strand, 23289757 - 23289839
Alignment:
Q  186 tcaataacagaatcataggcgaaagggtaacctttctaagttcatcccagagcttgtagcagtttgcattatgaggaccatgt 268  Q
    |||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||| || | ||||||||||||||||||    
T  23289757 tcaataacagaatcatgggcgaaagagaaacctttctaagttcatcccagagcttgtagaagctggcattatgaggaccatgt 23289839  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 268 - 364
Target Start/End: Original strand, 21646226 - 21646321
Alignment:
Q  268 ttaccagatgattgcacactaacatgagaatatgaaccataagaaagggggatcacttccccatatggtacaaattgactctatcggatcaggcaca 364  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||  |||||| ||||||||| | ||||||||||| | ||| ||||||||||||    
T  21646226 ttaccagatgattgcacactgacatgagagtatgaaccataagaaa-agggatcgcttccccatctcgtacaaattgattgtattggatcaggcaca 21646321  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 312
Target Start/End: Original strand, 21624469 - 21624513
Alignment:
Q  268 ttaccagatgattgcacactaacatgagaatatgaaccataagaa 312  Q
    |||||||||||||||||||| |||||||| |||||||||||||||    
T  21624469 ttaccagatgattgcacactgacatgagagtatgaaccataagaa 21624513  T

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Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 15007625 - 15007779
Alignment:
Q  18 tcattttataggtgtgatgttttaagctatggggtcatcttatgggagctctttgccaagcaaaaacactgacattatgaatccgacaatgaatccatac 117  Q
    ||||||| |||||||||| |||| || ||||||||||||||||||||||||||| |||||||  ||| |||       |||   || | |||||| |||     
T  15007625 tcattttgtaggtgtgatatttttagttatggggtcatcttatgggagctctttaccaagcaggaaccctg-------gaaa--ga-agtgaatctatat 15007714  T
Q  118 cgagttatttatcatgttggcgaggaggatggtcgtctggacattccagacaatatggaccctga 182  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||    
T  15007715 cgagttatttatcatgttggtgaggaggatggccgtctggacattccagacattatggcccctga 15007779  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 15021742 - 15021896
Alignment:
Q  18 tcattttataggtgtgatgttttaagctatggggtcatcttatgggagctctttgccaagcaaaaacactgacattatgaatccgacaatgaatccatac 117  Q
    ||||||| ||||||||||||||| || ||||||||||||||||||||||||||| |||||||  ||| |||       |||   || | || ||| |||     
T  15021742 tcattttgtaggtgtgatgtttttagttatggggtcatcttatgggagctctttaccaagcaggaaccctg-------gaaa--ga-agtgtatctatat 15021831  T
Q  118 cgagttatttatcatgttggcgaggaggatggtcgtctggacattccagacaatatggaccctga 182  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||    
T  15021832 cgagttatttatcatgttggtgaggaggatggccgtctggacattccagacattatggcccctga 15021896  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 15028860 - 15029014
Alignment:
Q  18 tcattttataggtgtgatgttttaagctatggggtcatcttatgggagctctttgccaagcaaaaacactgacattatgaatccgacaatgaatccatac 117  Q
    ||||||| ||||||||||||||| || ||||||||||||||||||||||||||| |||||||  ||| |||       |||   || | || ||| |||     
T  15028860 tcattttgtaggtgtgatgtttttagttatggggtcatcttatgggagctctttaccaagcaggaaccctg-------gaaa--ga-agtgtatctatat 15028949  T
Q  118 cgagttatttatcatgttggcgaggaggatggtcgtctggacattccagacaatatggaccctga 182  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||    
T  15028950 cgagttatttatcatgttggtgaggaggatggccgtctggacattccagacattatggcccctga 15029014  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 1251415 - 1251479
Alignment:
Q  107 tgaatccataccgagttatttatcatgttggcgaggaggatggtcgtctggacattccagacaat 171  Q
    ||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  1251415 tgaattcataccgaattatttatcatgttggcgaggaggatggccgtctggacattccaaacaat 1251479  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 1251331 - 1251383
Alignment:
Q  18 tcattttataggtgtgatgttttaagctatggggtcatcttatgggagctctt 70  Q
    ||||||| ||||||||||||||| ||||||| |||||||||||||||||||||    
T  1251331 tcattttttaggtgtgatgtttttagctatgaggtcatcttatgggagctctt 1251383  T

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