View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7285_low_4 (Length: 310)
Name: NF7285_low_4
Description: NF7285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7285_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 4175964 - 4176133
Alignment:
| Q |
15 |
aatgttaaggtggaacacaattgttgcgtgtgtatggtgagggataaaggtgcagcgtttataccatgtggacacacgttttgcaggatgtgttcaagag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4175964 |
aatgttaaggtggaacacaattgttgcgtgtgtatggtgagggataaaggtgcagcgtttataccatgtggacacacgttttgcaggatgtgttcaagag |
4176063 |
T |
|
| Q |
115 |
agctttgggttagtagagggaattgtcctctttgcaatcattttattttagaagttcttgatattttctg |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4176064 |
agctttgggttagtagagggaattgtcctctttgcaatcattttattttagaagttcttgatattttctg |
4176133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 60 - 184
Target Start/End: Original strand, 55518567 - 55518691
Alignment:
| Q |
60 |
aaaggtgcagcgtttataccatgtggacacacgttttgcaggatgtgttcaagagagctttgggttagtagagggaattgtcctctttgcaatcatttta |
159 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| |||||||| |||||||||| || || ||| | | | |||| |||||||| ||||| |||| || || |
|
|
| T |
55518567 |
aaaggtgcagcgttcataccgtgtggacacactttttgcagagtgtgttcaagggaactgtggttgaatcgaggaaattgtcccctttgtaatcgttcta |
55518666 |
T |
|
| Q |
160 |
ttttagaagttcttgatattttctg |
184 |
Q |
| |
|
|| | || |||| ||||||||||| |
|
|
| T |
55518667 |
ttctcgagattctcgatattttctg |
55518691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 8902901 - 8902983
Alignment:
| Q |
36 |
tgttgcgtgtgtatggtgagggataaaggtgcagcgtttataccatgtggacacacgttttgcaggatgtgttcaagagagct |
118 |
Q |
| |
|
||||| ||||| |||| |||| |||||||||| |||||||| ||||||||||| || ||||||||| | ||||| || ||||| |
|
|
| T |
8902901 |
tgttgtgtgtgcatggggaggaataaaggtgcggcgtttattccatgtggacatactttttgcagggtttgttctagggagct |
8902983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University