View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7285_low_9 (Length: 249)
Name: NF7285_low_9
Description: NF7285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7285_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 17232897 - 17233145
Alignment:
| Q |
1 |
atagcttgagatatatcataataataatgttcaattcaataattgagagctagaaaatgttnnnnnnnt----tacac----agcctcacgaaacaaaat |
92 |
Q |
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| T |
17232897 |
atagcttgagatatatcataataataatgttcaattcaataattgagagctagaaaatgtttgggggagggggtacactatcagcctcacgaaacaaaat |
17232996 |
T |
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| Q |
93 |
aaaaagctatacatcttaagtcaaagtgaggaaagaattatgaagcacttataagactaggtgtgccgccgtgtccgacactcctatgatactcgtcgac |
192 |
Q |
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| T |
17232997 |
aaaaagctatacatcttaagtcaaagtgaggaaagaattatgaagcacttacaagactaggtgtgccgccgtgtccgacactcctatgatactcgtcaac |
17233096 |
T |
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| Q |
193 |
acatgttagacaaccaaaaccgatatcctaaataattttttcttcttct |
241 |
Q |
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| T |
17233097 |
acatgttggacaaccaaaaccgatatcctaaataattttttcttcttct |
17233145 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 32676409 - 32676488
Alignment:
| Q |
149 |
ctaggtgtgccgccgtgtccgacactcctatgatactcgt-cgacacatgttagacaaccaaaaccgatatcctaaataa |
227 |
Q |
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| T |
32676409 |
ctaggtgtgtcgccgtgtccgacactcctatgacacttgtacgacacgtgttggacagctatgaccgatgtcctaaataa |
32676488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 11411071 - 11411005
Alignment:
| Q |
162 |
cgtgtccgacactcctatgatactcgtc-gacacatgttagacaaccaaaaccgatatcctaaataa |
227 |
Q |
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| T |
11411071 |
cgtgtccgacactcctatgacacttgtctgacacatgtcggacaactaaaatcgatgtcctaaataa |
11411005 |
T |
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