View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7286_low_3 (Length: 291)

Name: NF7286_low_3
Description: NF7286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7286_low_3
NF7286_low_3
[»] scaffold0369 (1 HSPs)
scaffold0369 (11-78)||(16850-16917)
[»] chr5 (4 HSPs)
chr5 (14-77)||(22110874-22110937)
chr5 (18-74)||(16062552-16062608)
chr5 (35-78)||(8504625-8504668)
chr5 (31-64)||(20198625-20198658)
[»] scaffold0100 (1 HSPs)
scaffold0100 (14-78)||(10055-10119)
[»] scaffold0056 (1 HSPs)
scaffold0056 (14-78)||(15746-15810)
[»] scaffold0004 (2 HSPs)
scaffold0004 (14-78)||(65180-65244)
scaffold0004 (15-78)||(74648-74711)
[»] chr8 (9 HSPs)
chr8 (14-78)||(22344183-22344247)
chr8 (14-78)||(22355843-22355907)
chr8 (14-74)||(36304858-36304918)
chr8 (14-65)||(20179420-20179471)
chr8 (14-65)||(42818797-42818848)
chr8 (16-78)||(38988449-38988511)
chr8 (16-78)||(39019546-39019608)
chr8 (14-74)||(6573924-6573984)
chr8 (31-63)||(12577031-12577063)
[»] chr1 (10 HSPs)
chr1 (14-78)||(14793326-14793390)
chr1 (14-65)||(21046948-21046999)
chr1 (14-65)||(4596744-4596795)
chr1 (14-65)||(19675853-19675904)
chr1 (14-65)||(39060240-39060291)
chr1 (14-65)||(42912152-42912203)
chr1 (20-78)||(45496129-45496187)
chr1 (14-74)||(6833363-6833423)
chr1 (14-78)||(21244747-21244811)
chr1 (14-65)||(16059213-16059264)
[»] chr7 (8 HSPs)
chr7 (14-65)||(19282194-19282245)
chr7 (14-65)||(20585458-20585509)
chr7 (15-78)||(24270695-24270758)
chr7 (14-65)||(44374048-44374099)
chr7 (14-65)||(44382913-44382964)
chr7 (14-65)||(12466159-12466210)
chr7 (14-58)||(14161776-14161820)
chr7 (31-75)||(43747593-43747637)
[»] chr6 (9 HSPs)
chr6 (14-65)||(25920762-25920813)
chr6 (14-65)||(27126376-27126427)
chr6 (14-65)||(7825748-7825799)
chr6 (14-65)||(19234471-19234522)
chr6 (14-60)||(12419473-12419519)
chr6 (14-60)||(12420127-12420173)
chr6 (14-65)||(30674294-30674345)
chr6 (14-59)||(29044347-29044392)
chr6 (31-77)||(22556321-22556367)
[»] chr4 (13 HSPs)
chr4 (14-65)||(11425056-11425107)
chr4 (14-65)||(37018700-37018751)
chr4 (14-62)||(17958435-17958483)
chr4 (18-74)||(25512645-25512701)
chr4 (14-74)||(45315167-45315227)
chr4 (14-74)||(55582346-55582406)
chr4 (14-62)||(25090755-25090803)
chr4 (14-65)||(16997629-16997680)
chr4 (14-65)||(42874901-42874952)
chr4 (14-63)||(14548755-14548805)
chr4 (32-65)||(26922557-26922590)
chr4 (38-78)||(12622556-12622596)
chr4 (38-78)||(46225465-46225505)
[»] chr3 (18 HSPs)
chr3 (14-65)||(1208869-1208920)
chr3 (14-65)||(44269631-44269682)
chr3 (14-63)||(50352004-50352053)
chr3 (14-78)||(22842501-22842565)
chr3 (14-65)||(11258541-11258592)
chr3 (14-65)||(35065479-35065530)
chr3 (14-63)||(2842353-2842402)
chr3 (14-62)||(45804298-45804346)
chr3 (14-77)||(12540438-12540501)
chr3 (14-65)||(19884422-19884473)
chr3 (14-63)||(35353673-35353722)
chr3 (20-65)||(35353707-35353752)
chr3 (14-78)||(50756243-50756307)
chr3 (14-78)||(53646798-53646862)
chr3 (31-78)||(17207314-17207361)
chr3 (20-65)||(11258575-11258620)
chr3 (37-78)||(17044186-17044227)
chr3 (38-78)||(15565692-15565732)
[»] chr2 (7 HSPs)
chr2 (14-65)||(17306589-17306640)
chr2 (14-65)||(28653401-28653452)
chr2 (14-65)||(36839276-36839327)
chr2 (14-78)||(22685968-22686032)
chr2 (14-78)||(25587611-25587675)
chr2 (14-65)||(23969522-23969573)
chr2 (14-65)||(24515288-24515339)
[»] scaffold1662 (1 HSPs)
scaffold1662 (15-65)||(320-370)
[»] scaffold0379 (1 HSPs)
scaffold0379 (14-78)||(9809-9873)
[»] scaffold0174 (3 HSPs)
scaffold0174 (14-78)||(4191-4255)
scaffold0174 (14-78)||(10313-10377)
scaffold0174 (18-65)||(15168-15215)
[»] scaffold0146 (1 HSPs)
scaffold0146 (14-65)||(23498-23549)
[»] scaffold0112 (1 HSPs)
scaffold0112 (14-65)||(1951-2002)
[»] scaffold1817 (1 HSPs)
scaffold1817 (14-65)||(295-346)
[»] scaffold0111 (2 HSPs)
scaffold0111 (14-65)||(13433-13484)
scaffold0111 (14-65)||(19700-19751)
[»] scaffold0285 (1 HSPs)
scaffold0285 (14-65)||(18824-18874)
[»] scaffold0125 (1 HSPs)
scaffold0125 (14-65)||(27416-27467)
[»] scaffold0051 (1 HSPs)
scaffold0051 (20-78)||(64870-64928)
[»] scaffold0059 (1 HSPs)
scaffold0059 (38-78)||(49154-49194)


Alignment Details
Target: scaffold0369 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 16917 - 16850
Alignment:
Q  11 catcaaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  16917 catcaaccaacaacttcaaagacatcgacataaacttacaactttaacgacattggcgacaacagcgg 16850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 22110874 - 22110937
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaacagcg 77  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| |||||||    
T  22110874 caaccaacaacttcaacgacatcgacaacaacttacaactttaacgacattgacgacaacagcg 22110937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 16062552 - 16062608
Alignment:
Q  18 caacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaaca 74  Q
    |||||||||||| ||||||||||  ||||||||||||||||||||||| ||| ||||    
T  16062552 caacaacttcaacgacatcgacatcaacttacaactttaacgacattgacgacaaca 16062608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 8504668 - 8504625
Alignment:
Q  35 tcgacaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    ||||||| ||||||||||||||||||||||| ||| ||||||||    
T  8504668 tcgacaacaacttacaactttaacgacattgacgacaacagcgg 8504625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 20198658 - 20198625
Alignment:
Q  31 gacatcgacaaaaacttacaactttaacgacatt 64  Q
    ||||||||||| ||||||||||||||||||||||    
T  20198658 gacatcgacaataacttacaactttaacgacatt 20198625  T

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Target: scaffold0100 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 10119 - 10055
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| || |||||    
T  10119 caaccaacaacttcaacgacatcgacaacaacttacaactttaacgacattgacgacaatagcgg 10055  T

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Target: scaffold0056 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 15746 - 15810
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||| ||||||||    
T  15746 caaccaacaacttcaacgacattgacaacaacttacaactttaacgacattgacgacaacagcgg 15810  T

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Target: scaffold0004 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 65180 - 65244
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||||||||| ||| ||||||||    
T  65180 caaccaacaacttcaacgacatcgaccataacttacaactttaacgacattgacgacaacagcgg 65244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 74648 - 74711
Alignment:
Q  15 aaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    ||||||||| ||||| ||||||||||  ||||||||||||||||||||||| ||| ||||||||    
T  74648 aaccaacaatttcaacgacatcgacagcaacttacaactttaacgacattgacgacaacagcgg 74711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 22344183 - 22344247
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    ||||||||||||||||  |||||||||| ||||||||||||||||||||||| ||| ||||||||    
T  22344183 caaccaacaacttcaacaacatcgacaacaacttacaactttaacgacattgacgacaacagcgg 22344247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 22355843 - 22355907
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    ||||||||||||||||  |||||||||| ||||||||||||||||||||||| ||| ||||||||    
T  22355843 caaccaacaacttcaacaacatcgacaacaacttacaactttaacgacattgacgacaacagcgg 22355907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 36304858 - 36304918
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaaca 74  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| ||||    
T  36304858 caaccaacaacttcaacgacatcgacaacaacttacaactttaacgacattgacgacaaca 36304918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 20179471 - 20179420
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  20179471 caaccaacaacttcaacgacatcgacaacaacttacaactttaacgacattg 20179420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 42818848 - 42818797
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  42818848 caaccaacaacttcaatgacatcgacaacaacttacaactttaacgacattg 42818797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 38988449 - 38988511
Alignment:
Q  16 accaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    ||||||||||| || ||||||||||| ||||||||||||||||||||||| ||| ||||||||    
T  38988449 accaacaactttaacgacatcgacaacaacttacaactttaacgacattgacgacaacagcgg 38988511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 39019546 - 39019608
Alignment:
Q  16 accaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    ||||||||||| || ||||||||||| ||||||||||||||||||||||| ||| ||||||||    
T  39019546 accaacaactttaacgacatcgacaacaacttacaactttaacgacattgacgacaacagcgg 39019608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 6573984 - 6573924
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaaca 74  Q
    ||||||||||||| ||  || | ||||||||||||||||||||||||||||| ||| ||||    
T  6573984 caaccaacaacttaaacaacttagacaaaaacttacaactttaacgacattgacgacaaca 6573924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 12577031 - 12577063
Alignment:
Q  31 gacatcgacaaaaacttacaactttaacgacat 63  Q
    ||||||||||| |||||||||||||||||||||    
T  12577031 gacatcgacaacaacttacaactttaacgacat 12577063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 14793390 - 14793326
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    ||||||||||||| || ||||||||||| ||||||||||||||||||||||| ||| ||||||||    
T  14793390 caaccaacaactttaacgacatcgacaataacttacaactttaacgacattgacgacaacagcgg 14793326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 21046999 - 21046948
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  21046999 caaccaacaacttcaacgacatcgacaacaacttacaactttaacgacattg 21046948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 4596795 - 4596744
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||| ||||    
T  4596795 caaccaacaacttcaacgacatcgacaacaacttacaactttaacgaaattg 4596744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 19675853 - 19675904
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||| ||||||||||| ||||||||||| |||||||||||||||||||||||    
T  19675853 caacgaacaacttcaacgacatcgacaacaacttacaactttaacgacattg 19675904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 39060240 - 39060291
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  39060240 caaccaacaacttcaacgacattgacaacaacttacaactttaacgacattg 39060291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 42912152 - 42912203
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| ||||||||||||||| |||||||    
T  42912152 caaccaacaacttcaacgacatcgacaacaacttacaactttaatgacattg 42912203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 45496129 - 45496187
Alignment:
Q  20 acaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    ||||||||||  |||||||||| ||||||||||||||||||||||| ||| ||||||||    
T  45496129 acaacttcaacaacatcgacaacaacttacaactttaacgacattgacgacaacagcgg 45496187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 6833363 - 6833423
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaaca 74  Q
    |||| ||||||||||| | ||||||||| ||||||||||||||||||||||| ||| ||||    
T  6833363 caactaacaacttcaacggcatcgacaacaacttacaactttaacgacattgacgacaaca 6833423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 21244811 - 21244747
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    |||| ||||||||||| |||||| | || ||||||||||||||||||||||| ||| ||||||||    
T  21244811 caactaacaacttcaacgacatcaaaaacaacttacaactttaacgacattgacgacaacagcgg 21244747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 16059264 - 16059213
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||| ||||||||||| |||||||| || |||||||||||||||| ||||||    
T  16059264 caactaacaacttcaacgacatcgataacaacttacaactttaactacattg 16059213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 19282194 - 19282245
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  19282194 caaccaacaacttcaacgacatcgacaacaacttacaactttaacgacattg 19282245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 20585458 - 20585509
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  20585458 caaccaacaacttcaacgacatcgacaacaacttacaactttaacgacattg 20585509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 24270758 - 24270695
Alignment:
Q  15 aaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    ||||||||||||||| ||||||||||| |||||||||||||||| |||||| ||| ||||||||    
T  24270758 aaccaacaacttcaacgacatcgacaacaacttacaactttaacaacattgacgacaacagcgg 24270695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 44374048 - 44374099
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  44374048 caaccaacaacttcaacgacatcgacaacaacttacaactttaacgacattg 44374099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 44382913 - 44382964
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  44382913 caaccaacaacttcaacgacatcgacaacaacttacaactttaacgacattg 44382964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 12466210 - 12466159
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| ||||| |||||||||||||||||    
T  12466210 caaccaacaacttcaacgacatcgacaacaacttgcaactttaacgacattg 12466159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 14161820 - 14161776
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaac 58  Q
    |||||||||||||||| |||||||| || ||||||||||||||||    
T  14161820 caaccaacaacttcaacgacatcgaaaacaacttacaactttaac 14161776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 43747593 - 43747637
Alignment:
Q  31 gacatcgacaaaaacttacaactttaacgacattggcgagaacag 75  Q
    ||||||||||| ||||||||||||||||||||||| ||| |||||    
T  43747593 gacatcgacaacaacttacaactttaacgacattgacgacaacag 43747637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 25920762 - 25920813
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  25920762 caaccaacaacttcaacgacatcgacaacaacttacaactttaacgacattg 25920813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 27126427 - 27126376
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  27126427 caaccaacaacttcaaagacatcgacaacaacttacaactttaaagacattg 27126376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 7825748 - 7825799
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| |||||||||||||||| ||||||    
T  7825748 caaccaacaacttcaacgacatcgacaacaacttacaactttaacaacattg 7825799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 19234471 - 19234522
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| |||||||||||||||| ||||||    
T  19234471 caaccaacaacttcaacgacatcgacaacaacttacaactttaacaacattg 19234522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 12419519 - 12419473
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacga 60  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||    
T  12419519 caaccaacaacttcaacgacatcgacaacaacttacaactttaacga 12419473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 12420127 - 12420173
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacga 60  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||    
T  12420127 caaccaacaacttcaacgacatcgacaacaacttacaactttaacga 12420173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 30674345 - 30674294
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||   |||||||||| |||||||||||||||||||||||    
T  30674345 caaccaacaacttcagcaacatcgacaacaacttacaactttaacgacattg 30674294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 29044347 - 29044392
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacg 59  Q
    |||||||||||||||| || |||||||| |||||||||||||||||    
T  29044347 caaccaacaacttcaacgatatcgacaacaacttacaactttaacg 29044392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 22556321 - 22556367
Alignment:
Q  31 gacatcgacaaaaacttacaactttaacgacattggcgagaacagcg 77  Q
    ||||||||||  ||||||||||||||||||||||| ||| |||||||    
T  22556321 gacatcgacaccaacttacaactttaacgacattgacgacaacagcg 22556367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 11425056 - 11425107
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  11425056 caaccaacaacttcaacgacatcgacaacaacttacaactttaacgacattg 11425107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 37018700 - 37018751
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  37018700 caaccaacaacttcaacgacatcgacaacaacttacaactttaacgacattg 37018751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 17958435 - 17958483
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgaca 62  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  17958435 caaccaacaacttcaacgacatcgacaacaacttacaactttaacgaca 17958483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 25512645 - 25512701
Alignment:
Q  18 caacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaaca 74  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||| ||| ||||    
T  25512645 caacaacttcaacgacatcgacaacaacttacaactttaacgacattgacgacaaca 25512701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 45315227 - 45315167
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaaca 74  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||| ||||    
T  45315227 caaccaacaacttcaacgacattgacaacaacttacaactttaacgacattgacgacaaca 45315167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 55582346 - 55582406
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaaca 74  Q
    |||||||||||||||| ||||||||||| ||| ||||||||||||||||||| ||| ||||    
T  55582346 caaccaacaacttcaatgacatcgacaacaacgtacaactttaacgacattgacgacaaca 55582406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 25090755 - 25090803
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgaca 62  Q
    |||||||||||||||| ||||||||||| ||||||||||||||| ||||    
T  25090755 caaccaacaacttcaacgacatcgacaacaacttacaactttaatgaca 25090803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 16997629 - 16997680
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| || |||||||| ||||||||||||||| |||||||    
T  16997629 caaccaacaacttcaacgaaatcgacaacaacttacaactttaatgacattg 16997680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 42874901 - 42874952
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||| ||||  |||||||||||||||||||||||    
T  42874901 caaccaacaacttcaacgacattgacaccaacttacaactttaacgacattg 42874952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 14548755 - 14548805
Alignment:
Q  14 caaccaacaacttcaaag-acatcgacaaaaacttacaactttaacgacat 63  Q
    |||||||||||||||| | |||||||||| |||||||||||||||| ||||    
T  14548755 caaccaacaacttcaatggacatcgacaacaacttacaactttaacaacat 14548805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 26922590 - 26922557
Alignment:
Q  32 acatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||| |||||||||||||||||||||||    
T  26922590 acatcgacaacaacttacaactttaacgacattg 26922557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 12622556 - 12622596
Alignment:
Q  38 acaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    |||| ||||||||||||||||||||||| ||| ||||||||    
T  12622556 acaacaacttacaactttaacgacattgacgacaacagcgg 12622596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 46225505 - 46225465
Alignment:
Q  38 acaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    |||| ||||||||||||||||||||||| ||| ||||||||    
T  46225505 acaacaacttacaactttaacgacattgacgataacagcgg 46225465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 1208920 - 1208869
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  1208920 caaccaacaacttcaacgacatcgacaacaacttacaactttaacgacattg 1208869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 44269631 - 44269682
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  44269631 caaccaacaacttcaacgacatcgacaacaacttacaactttaacgacattg 44269682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 50352053 - 50352004
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacat 63  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  50352053 caaccaacaacttcaacgacatcgacaacaacttacaactttaacgacat 50352004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 22842565 - 22842501
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    |||||| ||||||||| ||||||||||| |||||||||||||||||||||||  || ||||||||    
T  22842565 caaccagcaacttcaacgacatcgacaacaacttacaactttaacgacattgaagacaacagcgg 22842501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 11258541 - 11258592
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||| ||| |||||||||||||||||||||||    
T  11258541 caaccaacaacttcaacgacatcgtcaacaacttacaactttaacgacattg 11258592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 35065530 - 35065479
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| |||||| ||||||||||||||||    
T  35065530 caaccaacaacttcaatgacatcgacaacaacttataactttaacgacattg 35065479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 2842402 - 2842353
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacat 63  Q
    |||||||||||||||| ||||| ||||| |||||||||||||||||||||    
T  2842402 caaccaacaacttcaacgacatggacaacaacttacaactttaacgacat 2842353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 45804346 - 45804298
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgaca 62  Q
    |||||||||||||||| ||||||||| | ||||||||||||||||||||    
T  45804346 caaccaacaacttcaacgacatcgacgacaacttacaactttaacgaca 45804298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 77
Target Start/End: Original strand, 12540438 - 12540501
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaacagcg 77  Q
    ||||||||||||||||  |||| ||||| |||||||||||||||| |||||| ||| |||||||    
T  12540438 caaccaacaacttcaacaacattgacaacaacttacaactttaacaacattgacgacaacagcg 12540501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 19884473 - 19884422
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| |||||| |||||| |||||||||    
T  19884473 caaccaacaacttcaacgacatcgacaacaacttaaaactttgacgacattg 19884422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 35353673 - 35353722
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacat 63  Q
    |||||||||||||||| ||| ||||||| |||||||||||| ||||||||    
T  35353673 caaccaacaacttcaacgacttcgacaacaacttacaacttcaacgacat 35353722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 35353707 - 35353752
Alignment:
Q  20 acaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||| |||||||| || |||||||||||||||||||||||    
T  35353707 acaacttcaacgacatcgataacaacttacaactttaacgacattg 35353752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 50756307 - 50756243
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    ||||||||||| || |  |||||||||| ||||||||| ||||||||||||| ||| ||||||||    
T  50756307 caaccaacaacatcgacaacatcgacaacaacttacaaatttaacgacattgacgacaacagcgg 50756243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 53646862 - 53646798
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    ||||||||||||| ||  || | ||||| ||||||||||||||||||||||| ||| ||||||||    
T  53646862 caaccaacaacttaaacaacttagacaacaacttacaactttaacgacattgacgacaacagcgg 53646798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 17207314 - 17207361
Alignment:
Q  31 gacatcgacaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    |||||| |||| ||||||||||||||||||||||| ||| ||||||||    
T  17207314 gacatcaacaacaacttacaactttaacgacattgacgacaacagcgg 17207361  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 11258575 - 11258620
Alignment:
Q  20 acaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    ||||||| || ||||| ||||| |||||||||||||||||||||||    
T  11258575 acaactttaacgacattgacaacaacttacaactttaacgacattg 11258620  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 17044186 - 17044227
Alignment:
Q  37 gacaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    ||||| ||||||||||||||||||||||| ||| ||||||||    
T  17044186 gacaacaacttacaactttaacgacattgacgataacagcgg 17044227  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 15565692 - 15565732
Alignment:
Q  38 acaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    |||| ||||||||||||||||||||||| ||| ||||||||    
T  15565692 acaacaacttacaactttaacgacattgacgacaacagcgg 15565732  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 17306589 - 17306640
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  17306589 caaccaacaacttcaacgacatcgacaacaacttacaactttaacgacattg 17306640  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 28653452 - 28653401
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  28653452 caaccaacaacttcaacgacatcgacaacaacttacaactttaacgacattg 28653401  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 36839276 - 36839327
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  36839276 caaccaacaacttcaacgacatcgacaacaacttacaactttaacgacattg 36839327  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 22685968 - 22686032
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    |||||||||||||||| ||||||||| | ||||||||||||||| ||||||| ||| ||||||||    
T  22685968 caaccaacaacttcaacgacatcgaccacaacttacaactttaatgacattgacgacaacagcgg 22686032  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 25587675 - 25587611
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    ||||||||||||||||  ||||| |||| ||||||||||||||||||||||| ||| ||||||||    
T  25587675 caaccaacaacttcaactacatccacaacaacttacaactttaacgacattgacgacaacagcgg 25587611  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 23969573 - 23969522
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| ||||||||| |||||||||||||    
T  23969573 caaccaacaacttcaacgacatcgacaacaacttacaaatttaacgacattg 23969522  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 24515288 - 24515339
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| || |||||||| ||||| |||||||||||||||||    
T  24515288 caaccaacaacttcaacgaaatcgacaacaacttgcaactttaacgacattg 24515339  T

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Target: scaffold1662 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1662
Description:

Target: scaffold1662; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 370 - 320
Alignment:
Q  15 aaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  370 aaccaacaacttcaacgacatcgacaacaacttacaactttaacgacattg 320  T

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Target: scaffold0379 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 9809 - 9873
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    ||||||||||||| || ||||||||||| ||||||||||||||| ||||||| ||| ||||||||    
T  9809 caaccaacaactttaacgacatcgacaacaacttacaactttaatgacattgacgacaacagcgg 9873  T

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Target: scaffold0174 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 4191 - 4255
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    ||||||| |||||||| ||||||||||| |||||||||||||||||||||||  || ||||||||    
T  4191 caaccaataacttcaacgacatcgacaacaacttacaactttaacgacattgaagacaacagcgg 4255  T

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Target: scaffold0174; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 10313 - 10377
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    ||||||| |||||||| ||||||||||| |||||||||||||||||||||||  || ||||||||    
T  10313 caaccaataacttcaacgacatcgacaacaacttacaactttaacgacattgatgacaacagcgg 10377  T

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Target: scaffold0174; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 15168 - 15215
Alignment:
Q  18 caacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||| ||||||||||| |||||||||||||||| ||||||    
T  15168 caacaacttcaacgacatcgacaacaacttacaactttaacaacattg 15215  T

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Target: scaffold0146 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 23498 - 23549
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| |||||| ||||||||||||||||    
T  23498 caaccaacaacttcaacgacatcgacaacaacttaaaactttaacgacattg 23549  T

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Target: scaffold0112 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 1951 - 2002
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||| ||||||||||| ||||||||||| |||||||||||||||||||||||    
T  1951 caacgaacaacttcaatgacatcgacaacaacttacaactttaacgacattg 2002  T

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Target: scaffold1817 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1817
Description:

Target: scaffold1817; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 346 - 295
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| |||||| ||||||||| ||||||    
T  346 caaccaacaacttcaacgacatcgacaacaacttaaaactttaactacattg 295  T

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Target: scaffold0111 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 13484 - 13433
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| |||||||| |||||| |||||||    
T  13484 caaccaacaacttcaacgacatcgacaacaacttacagctttaatgacattg 13433  T

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Target: scaffold0111; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 19751 - 19700
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    |||||||||||||||| ||||||||||| |||||||| |||||| |||||||    
T  19751 caaccaacaacttcaacgacatcgacaacaacttacagctttaatgacattg 19700  T

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Target: scaffold0285 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 18824 - 18874
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    ||||||||||||||||  |||||||||| ||||||||| |||||||||||||    
T  18824 caaccaacaacttcaacaacatcgacaacaacttacaa-tttaacgacattg 18874  T

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Target: scaffold0125 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 27416 - 27467
Alignment:
Q  14 caaccaacaacttcaaagacatcgacaaaaacttacaactttaacgacattg 65  Q
    ||||||| |||||||| |||||||| || |||||||||||||||| ||||||    
T  27416 caaccaaaaacttcaatgacatcgataacaacttacaactttaactacattg 27467  T

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Target: scaffold0051 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 64928 - 64870
Alignment:
Q  20 acaacttcaaagacatcgacaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    ||||||||||  || | ||||| ||||||||||||||||||||||| ||| ||||||||    
T  64928 acaacttcaagaacttagacaacaacttacaactttaacgacattgacgataacagcgg 64870  T

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Target: scaffold0059 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 49154 - 49194
Alignment:
Q  38 acaaaaacttacaactttaacgacattggcgagaacagcgg 78  Q
    |||| ||||||||||||||||||||||| ||| ||||||||    
T  49154 acaacaacttacaactttaacgacattgacgacaacagcgg 49194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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