View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7286_low_5 (Length: 249)
Name: NF7286_low_5
Description: NF7286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7286_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 4 - 246
Target Start/End: Original strand, 39485446 - 39485694
Alignment:
| Q |
4 |
agaagaaacaaactaacatcgcaagaaagtgagcaccataannnnnnnnnaaggattgagcgatccaaacatgttaatttgatgaaggtctttgatgtct |
103 |
Q |
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| T |
39485446 |
agaagaaacaa-ctaacatcgcaagaaagtgagcaccataatttttttt-aaggattgagcgatccaaacatgtcaatttgatgaaggtctttgatgtct |
39485543 |
T |
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| Q |
104 |
tatatcaaagtaatatacttatgaaacatgtgagtttggtcataaaggatgtcaaagtaatgaagagaatatttaaaacaaattatg--------ttacg |
195 |
Q |
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| T |
39485544 |
tatatcaaagtaatatgcttatgaaacatgtgagtttggtcataaaggatgtcaaagtaatgaagagaatatttaagacaaattatgttacggacttacg |
39485643 |
T |
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| Q |
196 |
gtaattcaagtgcatagtcagaataagaccttgatgggtaacacgaaactc |
246 |
Q |
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| T |
39485644 |
gtaattcaactacatagtcagaataagaccttgacgagtaacatgaaactc |
39485694 |
T |
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