View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7287_high_4 (Length: 247)

Name: NF7287_high_4
Description: NF7287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7287_high_4
NF7287_high_4
[»] chr3 (5 HSPs)
chr3 (102-203)||(26130578-26130679)
chr3 (105-203)||(23602813-23602911)
chr3 (20-77)||(23602935-23602992)
chr3 (20-77)||(26130501-26130558)
chr3 (114-189)||(8594821-8594896)
[»] chr4 (6 HSPs)
chr4 (20-203)||(22340129-22340308)
chr4 (103-203)||(29124010-29124110)
chr4 (105-189)||(15706134-15706217)
chr4 (20-72)||(17839027-17839079)
chr4 (20-72)||(29123931-29123983)
chr4 (102-189)||(4303773-4303860)
[»] chr7 (2 HSPs)
chr7 (144-203)||(22542872-22542931)
chr7 (20-57)||(40892257-40892294)
[»] scaffold0032 (1 HSPs)
scaffold0032 (20-72)||(58889-58941)
[»] chr1 (2 HSPs)
chr1 (102-189)||(49369337-49369424)
chr1 (20-69)||(49369447-49369496)
[»] scaffold0041 (1 HSPs)
scaffold0041 (20-57)||(73990-74027)
[»] chr8 (2 HSPs)
chr8 (20-72)||(9098342-9098393)
chr8 (20-72)||(31423708-31423760)


Alignment Details
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 102 - 203
Target Start/End: Original strand, 26130578 - 26130679
Alignment:
Q  102 ttctagcctttctgtactgtaactaactgttttcagtcccttttggcacgccttgtgctttgagggaccgtttgtgttttaatatattattcttagtttc 201  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  26130578 ttctagcctttctgtattgtaactaactgctttcagtcccttttggcacgccttgtgctttgagggactgtttgtgttttaatatatttttcttagtttc 26130677  T
Q  202 tt 203  Q
    ||    
T  26130678 tt 26130679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 23602911 - 23602813
Alignment:
Q  105 tagcctttctgtactgtaactaactgttttcagtcccttttggcacgccttgtgctttgagggaccgtttgtgttttaatatattattcttagtttctt 203  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  23602911 tagcctttccgtattgtaactaactgttttcagtcccttttggcacaccttgtgctttgaggaactgtttgtgttttaatatattattcttagtttctt 23602813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 23602992 - 23602935
Alignment:
Q  20 tcccttttggagacaaaattccttaagttgtttacagattgccatgtaatgtccgttg 77  Q
    ||||||||||||||||||| | ||| |||||||||||| ||  |||||||||| ||||    
T  23602992 tcccttttggagacaaaatcctttatgttgtttacagactgttatgtaatgtctgttg 23602935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 26130501 - 26130558
Alignment:
Q  20 tcccttttggagacaaaattccttaagttgtttacagattgccatgtaatgtccgttg 77  Q
    ||||||||||||||||||| | ||| |||||||||||| ||  |||||||||| ||||    
T  26130501 tcccttttggagacaaaatcctttatgttgtttacagactgttatgtaatgtctgttg 26130558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 8594896 - 8594821
Alignment:
Q  114 tgtactgtaactaactgttttcagtcccttttggcacgccttgtgctttgagggaccgtttgtg-ttttaatatatt 189  Q
    |||| ||||||||||| |||| || | |||||| ||| |||||||| ||||||||| ||||||| ||||||||||||    
T  8594896 tgtattgtaactaactatttttaggctcttttgacacaccttgtgc-ttgagggactgtttgtgtttttaatatatt 8594821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 22340308 - 22340129
Alignment:
Q  20 tcccttttggagacaaaattccttaagttgtttacagattgccatgtaatgtccgttgttgnnnnnnnnnnnnggctatttattctagcctttctgtact 119  Q
    ||||||||||||||||||| | ||| |||||||||||| |||||||||||||  |||||||            |||| ||    |||||||| ||||| |    
T  22340308 tcccttttggagacaaaatcctttatgttgtttacagactgccatgtaatgtatgttgttgtttttgttttttggctgtt----ctagccttactgtatt 22340213  T
Q  120 gtaactaactgttttcagtcccttttggcacgccttgtgctttgagggaccgtttgtgttttaatatattattcttagtttctt 203  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  22340212 gtaactaactgttttcagtcccttttgacacaccttgtgctttgagggactgtttgcgttttaatatattattcttagtttctt 22340129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 29124010 - 29124110
Alignment:
Q  103 tctagcctttctgtactgtaactaactgttttcagtcccttttggcacgccttgtgctttgagggaccgtttgtgttttaatatattattcttagtttct 202  Q
    ||||||||| ||||| |||||||||||||||||||| ||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||| |||||    
T  29124010 tctagccttactgtattgtaactaactgttttcagttccttttggcacaccttatgctttgagggactgtttgtgttttaatatattattcttaatttct 29124109  T
Q  203 t 203  Q
    |    
T  29124110 t 29124110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 189
Target Start/End: Original strand, 15706134 - 15706217
Alignment:
Q  105 tagcctttctgtactgtaactaactgttttcagtcccttttggcacgccttgtgctttgagggaccgtttgtgttttaatatatt 189  Q
    ||||||| ||||| ||||||||||| |||||||| ||||||||||| |||||| | |||||||||||| ||| ||||||||||||    
T  15706134 tagccttactgtattgtaactaactattttcagttccttttggcacaccttgtac-ttgagggaccgtatgtattttaatatatt 15706217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 17839027 - 17839079
Alignment:
Q  20 tcccttttggagacaaaattccttaagttgtttacagattgccatgtaatgtc 72  Q
    ||||||||||||||||||| ||||| |||||||||||| |||| |||||||||    
T  17839027 tcccttttggagacaaaatcccttatgttgtttacagactgccttgtaatgtc 17839079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 29123931 - 29123983
Alignment:
Q  20 tcccttttggagacaaaattccttaagttgtttacagattgccatgtaatgtc 72  Q
    ||||||||||||||||||| | ||| ||||||| ||||||||| |||||||||    
T  29123931 tcccttttggagacaaaatcctttatgttgtttgcagattgccttgtaatgtc 29123983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 189
Target Start/End: Original strand, 4303773 - 4303860
Alignment:
Q  102 ttctagcctttctgtactgtaactaactgttttcagtcccttttggcacgccttgtgctttgagggaccgtttgtg-ttttaatatatt 189  Q
    |||||||||| |||||||||||||||||  |||||||  |||||||||   ||||||| ||||||||  || |||| ||||||||||||    
T  4303773 ttctagccttactgtactgtaactaacttatttcagtttcttttggcaaatcttgtgc-ttgagggattgtatgtgtttttaatatatt 4303860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 22542931 - 22542872
Alignment:
Q  144 ttggcacgccttgtgctttgagggaccgtttgtgttttaatatattattcttagtttctt 203  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22542931 ttggcacaccttgtgctttgagggactgtttgtgttttaatatattattcttagtttctt 22542872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 40892257 - 40892294
Alignment:
Q  20 tcccttttggagacaaaattccttaagttgtttacaga 57  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  40892257 tcccttttggagacaaaatcccttatgttgtttacaga 40892294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 58889 - 58941
Alignment:
Q  20 tcccttttggagacaaaattccttaagttgtttacagattgccatgtaatgtc 72  Q
    ||||||||||||||||||| ||||| |||||||||||| || | |||||||||    
T  58889 tcccttttggagacaaaatcccttatgttgtttacagactgtcttgtaatgtc 58941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 189
Target Start/End: Complemental strand, 49369424 - 49369337
Alignment:
Q  102 ttctagcctttctgtactgtaactaactgttttcagtcccttttggcacgccttgtgctttgagggaccgtttgtg-ttttaatatatt 189  Q
    |||||||||| ||||| ||||||||||| ||||||||  |||||||||| |||| ||| || |||||| || |||| ||||||||||||    
T  49369424 ttctagccttactgtattgtaactaactattttcagtttcttttggcacaccttatgc-ttaagggactgtatgtgtttttaatatatt 49369337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 49369496 - 49369447
Alignment:
Q  20 tcccttttggagacaaaattccttaagttgtttacagattgccatgtaat 69  Q
    ||||||||||||||||||| | ||| |||||||||||| |||| ||||||    
T  49369496 tcccttttggagacaaaatccattatgttgtttacagactgccttgtaat 49369447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 74027 - 73990
Alignment:
Q  20 tcccttttggagacaaaattccttaagttgtttacaga 57  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  74027 tcccttttggagacaaaatcccttatgttgtttacaga 73990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 9098342 - 9098393
Alignment:
Q  20 tcccttttggagacaaaattccttaagttgtttacagattgccatgtaatgtc 72  Q
    |||||||||||||||||| ||||||  ||||||||||| || |||||||||||    
T  9098342 tcccttttggagacaaaa-tccttacattgtttacagactgtcatgtaatgtc 9098393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 31423708 - 31423760
Alignment:
Q  20 tcccttttggagacaaaattccttaagttgtttacagattgccatgtaatgtc 72  Q
    ||||||||||||||||||| | ||| |||||||||||| |  |||||||||||    
T  31423708 tcccttttggagacaaaatccattatgttgtttacagactatcatgtaatgtc 31423760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University