View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7287_high_5 (Length: 234)
Name: NF7287_high_5
Description: NF7287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7287_high_5 |
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| [»] scaffold0432 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 9828896 - 9828695
Alignment:
| Q |
14 |
aagaatatgtgtaaccaaaagtcatgatgataaggtcaactatcagcaaagtattccaacaaatgatgatgctgaatcaatagaggacttatcaacaaag |
113 |
Q |
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| T |
9828896 |
aagaaaatgtgtaaccaaaagtcatgatgataaggtcaactatcagcaaagtattccaacaaatgatgatgctgaatcaatagaggacttatca-caaag |
9828798 |
T |
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| Q |
114 |
tgaggaaagaaactcgaaaggttttattgttgatgattttgatgtatctagttgtgaagtcacctctagcaagtcacaagatggaggacataatggtgat |
213 |
Q |
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| T |
9828797 |
tgaggaaggaaactcgaaaggttttattgttgatgattttgatgtatctagttgtgaagtcacctctagcaagtcacaagatggaggacataatggtgat |
9828698 |
T |
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| Q |
214 |
gtc |
216 |
Q |
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||| |
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| T |
9828697 |
gtc |
9828695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 9755421 - 9755221
Alignment:
| Q |
14 |
aagaatatgtgtaaccaaaagtcatgatgataaggtcaactatcagcaaagtattccaacaaatgatgatgctgaatcaatagaggacttatcaacaaag |
113 |
Q |
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| T |
9755421 |
aagaaaatgtgtaaccaaaagtcatgatgataaggtcaactatcagcaaagtattccaacaaatgatgatgctgaatcaatagaggacttatc-acaaag |
9755323 |
T |
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| Q |
114 |
tgaggaaagaaactcgaaaggttttattgttgatgattttgatgtatctagttgtgaagtcacctctagcaagtcacaagatggaggacataatggtgat |
213 |
Q |
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| T |
9755322 |
tgaggaaggaaacttgaaaggttttattgttgatgattttgatttatctggttgtgaagtcacctctagcaagtcacaagatggaggacgtaatggtgat |
9755223 |
T |
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| Q |
214 |
gt |
215 |
Q |
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|| |
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| T |
9755222 |
gt |
9755221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 9804063 - 9803854
Alignment:
| Q |
20 |
atgtgtaaccaaaagtcatgatgataaggtcaactatcagcaaagtattccaacaaatgatgatgctga---------------atcaatagaggactta |
104 |
Q |
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| T |
9804063 |
atgtgtaagcaaaattcatggtgataaggtcaactatcagcaaagtattccaacaaatgaagaggctcatgataatgattatggatcaatagaggactta |
9803964 |
T |
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| Q |
105 |
tcaacaaagtgaggaaagaaactcgaaaggttttattgttgatgattttgatgtatctagttgtgaagtcacctctagcaagtcacaagatggaggacat |
204 |
Q |
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| T |
9803963 |
tca-caaagcgaagaaggaaactttatagattttatcgtcgatgattttgatgtatctagttgtcaagtcacctctagcatgtcccaagatggaggatgt |
9803865 |
T |
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| Q |
205 |
aatggtgatgt |
215 |
Q |
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||||||||||| |
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| T |
9803864 |
aatggtgatgt |
9803854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 9708640 - 9708599
Alignment:
| Q |
43 |
ataaggtcaactatcagcaaagtattccaacaaatgatgatg |
84 |
Q |
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| T |
9708640 |
ataaggtcaagtatcagcagagtattccaaaaaatgatgatg |
9708599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 9755952 - 9755892
Alignment:
| Q |
112 |
agtgaggaaagaaactcgaaaggttttattgttgatgattttgatgtatctagttgtgaag |
172 |
Q |
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| T |
9755952 |
agtgaggaaggaaacatgaatgattttattgttgatgattttgatgcatctgattgtgaag |
9755892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 79 - 199
Target Start/End: Complemental strand, 7319 - 7200
Alignment:
| Q |
79 |
atgatgctgaatcaatagaggacttatcaacaaagtgaggaaagaaactcgaaaggttttattgttgatgattttgatgtatctagttgtgaagtcacct |
178 |
Q |
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||||||||| ||||||||||||||||||| |||||||| ||| |||||| |||||||||||||||||||||||||||| ||||||| ||||||||| ||| |
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| T |
7319 |
atgatgctggatcaatagaggacttatca-caaagtgaagaaggaaacttgaaaggttttattgttgatgattttgatatatctagctgtgaagtcgcct |
7221 |
T |
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| Q |
179 |
ctagcaagtcacaagatggag |
199 |
Q |
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| T |
7220 |
ctagcaagtcacaagaaggag |
7200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 7368 - 7334
Alignment:
| Q |
45 |
aaggtcaactatcagcaaagtattccaacaaatga |
79 |
Q |
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| T |
7368 |
aaggtcaactatcatcaaagtattccaacaaatga |
7334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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