View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7287_low_1 (Length: 815)

Name: NF7287_low_1
Description: NF7287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7287_low_1
NF7287_low_1
[»] chr8 (5 HSPs)
chr8 (19-355)||(4620198-4620534)
chr8 (411-674)||(4620617-4620886)
chr8 (19-149)||(1846900-1847030)
chr8 (51-183)||(4787123-4787255)
chr8 (55-189)||(4298017-4298151)
[»] chr1 (13 HSPs)
chr1 (19-176)||(40034320-40034477)
chr1 (19-167)||(7890673-7890821)
chr1 (25-176)||(51292129-51292280)
chr1 (37-159)||(38137497-38137619)
chr1 (37-156)||(7888419-7888538)
chr1 (19-189)||(43045955-43046125)
chr1 (19-176)||(45983332-45983489)
chr1 (19-151)||(3301238-3301370)
chr1 (19-189)||(45993099-45993269)
chr1 (19-160)||(43084383-43084524)
chr1 (19-151)||(43066320-43066452)
chr1 (19-76)||(43045502-43045559)
chr1 (210-255)||(45983246-45983291)
[»] chr2 (5 HSPs)
chr2 (19-160)||(34691333-34691474)
chr2 (19-160)||(34713745-34713886)
chr2 (19-160)||(16232682-16232823)
chr2 (19-167)||(33861347-33861495)
chr2 (210-255)||(33861558-33861603)
[»] chr4 (3 HSPs)
chr4 (732-797)||(50559109-50559174)
chr4 (27-151)||(4231983-4232107)
chr4 (92-165)||(19964623-19964696)
[»] chr5 (1 HSPs)
chr5 (90-181)||(16352207-16352298)
[»] chr6 (2 HSPs)
chr6 (19-151)||(7528735-7528867)
chr6 (37-151)||(7519364-7519478)


Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 4620198 - 4620534
Alignment:
Q  19 catatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4620198 catatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacatcctttttaatacctccaagcttgtagatcaaatgaccagc 4620297  T
Q  119 agtggttgacttcccagagtcgacatgaccaataaacacaatattaataccaacctttcctttatccattattgcaccttaatcttggaattctgccaat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4620298 agtggttgacttcccagagtcgacatgaccaataaacacaatattaataccaacctttcctttatccattattgcaccttaatcttggaattctgccaat 4620397  T
Q  219 tcaacacagaaaacaacaggacattagtaaaataaattactttcagtatgctagctaccaacaaaacaaaagaataacattctgacaagtcnnnnnnngc 318  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||       ||    
T  4620398 tcaacacagaaaacaacaggacataagtaaaataaattactttcagtatgctagctaccaacaaaacaaaagaataacattttgacaagtcaaaaaaagc 4620497  T
Q  319 aaaaccaatgataacctatgatacataggtacagggt 355  Q
    |||||||||||||||||||||||||||||||||||||    
T  4620498 aaaaccaatgataacctatgatacataggtacagggt 4620534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 411 - 674
Target Start/End: Original strand, 4620617 - 4620886
Alignment:
Q  411 tgtgctttttctagtatgttatgttaagaaaacataaacgaatatcactatatctatctggattcagaataacaacggttataaataagacaagtat--- 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||        
T  4620617 tgtgctttttctagtatgttatgttaagaaaacataaacgaatatcactatatctatctggattcagaataacaacggttataaataagacacataagcc 4620716  T
Q  508 ---tattattaacataatcgaaaagaaagagcagaaaacaaagaaacaaaacaatatctaacgatcatatacatacaatcgcttacgagtcgggacgata 604  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4620717 aagtattattaacataatcgaaaagaaagagcagaaaacaaagaaacaaaacaatatctaacgatcatatacatacaatcgcttacgagtcgggacgata 4620816  T
Q  605 cgaaattgaagaaaaagaaagcttgccctggaaggaagagaaatattgtagagaggagcagattggttcc 674  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4620817 cgaaattgaagaaaaagaaagcttgccctggaaggaagagaaagattgtagagaggagcagattggttcc 4620886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 1846900 - 1847030
Alignment:
Q  19 catatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagc 118  Q
    |||| |||||||||| | ||||||||||||| |||||||||||||||| ||| ||||| ||||||| |||||||||||||||||||||||||||||||||    
T  1846900 catacttgaatgaacgcctgtttatctcagcagcttctttctcaaatctctcgatgacatccttttcaatacctccaagcttgtagatcaaatgaccagc 1846999  T
Q  119 agtggttgacttcccagagtcgacatgacca 149  Q
     || ||||||||||| |||||||||||||||    
T  1847000 cgtcgttgacttcccggagtcgacatgacca 1847030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 51 - 183
Target Start/End: Complemental strand, 4787255 - 4787123
Alignment:
Q  51 gcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaa 150  Q
    ||||||||||||| || ||||||||| ||||||  ||| |||||||||||||||| ||||||| |||  |||||||||||||| |||| | | |||||||    
T  4787255 gcttctttctcaagtctctcaatgacatcctttccaatgcctccaagcttgtagagcaaatgagcagtggtggttgacttcccggagttggcttgaccaa 4787156  T
Q  151 taaacacaatattaataccaacctttcctttat 183  Q
    ||| |||||| ||||||| ||||||| ||||||    
T  4787155 taaccacaatgttaatacgaaccttttctttat 4787123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 55 - 189
Target Start/End: Original strand, 4298017 - 4298151
Alignment:
Q  55 ctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaa 154  Q
    ||||||||| || ||||||||| ||||||| ||| ||||| || ||||||| ||||||| ||| ||||||||||||||| |||| | |||| |||||||     
T  4298017 ctttctcaagtctctcaatgacatccttttcaatgcctccgagtttgtagagcaaatgagcagtagtggttgacttcccggagttggcatggccaataac 4298116  T
Q  155 cacaatattaataccaacctttcctttatccatta 189  Q
    |||||| ||||||| | |||||   ||||||||||    
T  4298117 cacaatgttaatacgagcctttttcttatccatta 4298151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 5e-43; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 40034477 - 40034320
Alignment:
Q  19 catatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagc 118  Q
    |||| |||||||| | | |||| |||||||| |||||||||||||||  ||||||||| |||||||||||||| |||||||||||||||||||||||| |    
T  40034477 catacttgaatgagcgcttgttcatctcagcagcttctttctcaaatttctcaatgacatcctttttaataccgccaagcttgtagatcaaatgaccacc 40034378  T
Q  119 agtggttgacttcccagagtcgacatgaccaataaacacaatattaataccaaccttt 176  Q
    |||||||||||||||||||||||||| ||||||||| || || ||||||  |||||||    
T  40034377 agtggttgacttcccagagtcgacattaccaataaatacgatgttaatatgaaccttt 40034320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 7890821 - 7890673
Alignment:
Q  19 catatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagc 118  Q
    |||| |||||||||  | |||| |||||||| ||||||||||||||||  || ||||| ||||||| |||||||||||||||||||||||||||||||||    
T  7890821 catacttgaatgaatgcctgttcatctcagcagcttctttctcaaatctatcgatgacatccttttcaatacctccaagcttgtagatcaaatgaccagc 7890722  T
Q  119 agtggttgacttcccagagtcgacatgaccaataaacacaatattaata 167  Q
     || ||||||||||| |||||||||||||||||||||| ||| ||||||    
T  7890721 cgtcgttgacttcccggagtcgacatgaccaataaacagaatgttaata 7890673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 25 - 176
Target Start/End: Original strand, 51292129 - 51292280
Alignment:
Q  25 tgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagcagtggt 124  Q
    ||||||||| |||||| |||||||  ||||||||||||| || ||||||| | | ||| | ||||||||||||||||||||||||||||||||||||  |    
T  51292129 tgaatgaacgcatgttcatctcagtagcttctttctcaagtctctcaatgtcattcttgtcaatacctccaagcttgtagatcaaatgaccagcagtatt 51292228  T
Q  125 tgacttcccagagtcgacatgaccaataaacacaatattaataccaaccttt 176  Q
    |||||| ||| ||||||||||||||||||||||||| ||||||| |||||||    
T  51292229 tgactttccatagtcgacatgaccaataaacacaatgttaatacgaaccttt 51292280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 37 - 159
Target Start/End: Complemental strand, 38137619 - 38137497
Alignment:
Q  37 tgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagcagtggttgacttcccaga 136  Q
    ||||||||||||  ||||||||||||| || ||||||||| ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  38137619 tgtttatctcagtagcttctttctcaagtctctcaatgacatccttttcaatacctccaagtttgtagatcaaatgaccagcagtagttgacttcccaga 38137520  T
Q  137 gtcgacatgaccaataaacacaa 159  Q
    ||| ||||||||||||| |||||    
T  38137519 gtcaacatgaccaataaccacaa 38137497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 37 - 156
Target Start/End: Complemental strand, 7888538 - 7888419
Alignment:
Q  37 tgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagcagtggttgacttcccaga 136  Q
    ||||||||||||| ||||||||||||| |  ||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7888538 tgtttatctcagcagcttctttctcaagtttctcgatgacatccttttcaatacctccaagcttgtagatcaaatgaccagcagtggttgacttcccgga 7888439  T
Q  137 gtcgacatgaccaataaaca 156  Q
     || ||||||||||||||||    
T  7888438 atcaacatgaccaataaaca 7888419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 43045955 - 43046125
Alignment:
Q  19 catatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagc 118  Q
    |||| |||||||||| | |||| |||||||| |||||||||||||| | |||||||||   ||| | |||||||||||||||||||||||| |||||||     
T  43045955 catacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaatgacacgcttgtcaatacctccaagcttgtagatcaagtgaccagt 43046054  T
Q  119 agtggttgacttcccagagtcgacatgaccaataaacacaatattaataccaacctttcctttatccatta 189  Q
     |||||||| ||||||||||||||||| ||||| | |||||| || ||   ||||||| ||||| ||||||    
T  43046055 ggtggttgatttcccagagtcgacatggccaatgaccacaatgttgatgtgaaccttttctttacccatta 43046125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 45983489 - 45983332
Alignment:
Q  19 catatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagc 118  Q
    |||| |||||||||| | |||| |||| ||| |||||||||||||  | |||||||||   ||| | ||||| |||||| |||| ||||||||||||||     
T  45983489 catacttgaatgaacgcttgttcatcttagcagcttctttctcaagactctcaatgacactcttgtgaatacatccaagtttgtggatcaaatgaccagt 45983390  T
Q  119 agtggttgacttcccagagtcgacatgaccaataaacacaatattaataccaaccttt 176  Q
    ||||||||||||||| ||||| ||||||||||||| |||||| ||||||| |||||||    
T  45983389 agtggttgacttcccggagtccacatgaccaataaccacaatgttaatacgaaccttt 45983332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 3301238 - 3301370
Alignment:
Q  19 catatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagc 118  Q
    |||| |||||||||| | |||| |||||||| |||||||||||||| | |||||| ||   ||| | |||||||||||||||||||||||| ||||| |     
T  3301238 catacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaatcacacgcttgtcaatacctccaagcttgtagatcaagtgaccggt 3301337  T
Q  119 agtggttgacttcccagagtcgacatgaccaat 151  Q
     |||||||||||||| |||||||||||||||||    
T  3301338 ggtggttgacttcccggagtcgacatgaccaat 3301370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 45993269 - 45993099
Alignment:
Q  19 catatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagc 118  Q
    |||| |||||||||| | || | |||||||| |||||||||||||  | ||| |||||   ||| | ||||| |||||| |||| ||| ||||||||||     
T  45993269 catacttgaatgaacgcttgatcatctcagcagcttctttctcaagactctcgatgacactcttgtgaatacatccaagtttgtggatgaaatgaccagt 45993170  T
Q  119 agtggttgacttcccagagtcgacatgaccaataaacacaatattaataccaacctttcctttatccatta 189  Q
    ||||||||||||||| ||||||||||||||||||| ||||||  |||||  ||||||| | ||||||||||    
T  45993169 agtggttgacttcccggagtcgacatgaccaataaccacaatgctaataggaaccttttccttatccatta 45993099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 43084383 - 43084524
Alignment:
Q  19 catatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagc 118  Q
    |||| |||||||||| | |||| |||||||| |||||||||||||| | ||| |||||   ||| | |||||||||||||||||||||||| |||||||     
T  43084383 catacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctctatgacacgcttgtcaatacctccaagcttgtagatcaagtgaccagt 43084482  T
Q  119 agtggttgacttcccagagtcgacatgaccaataaacacaat 160  Q
     |||||||| ||||||||||| ||||| ||||| | ||||||    
T  43084483 tgtggttgatttcccagagtcaacatggccaatgaccacaat 43084524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 43066452 - 43066320
Alignment:
Q  19 catatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagc 118  Q
    |||| |||||||||| | |||| |||||||| |||||||||||||| | |||||||||   ||| | |||||||||||| |||||||| || |||||||     
T  43066452 catacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaatgacacgcttgtcaatacctccaagtttgtagattaagtgaccagt 43066353  T
Q  119 agtggttgacttcccagagtcgacatgaccaat 151  Q
     ||||||||||| |||||||||||||| |||||    
T  43066352 ggtggttgacttgccagagtcgacatggccaat 43066320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 43045502 - 43045559
Alignment:
Q  19 catatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgac 76  Q
    |||| |||||||||| | |||| |||||||| |||||||||||||| | |||||||||    
T  43045502 catacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaatgac 43045559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 45983291 - 45983246
Alignment:
Q  210 tctgccaattcaacacagaaaacaacaggacattagtaaaataaat 255  Q
    |||||||||||||||||||||  |||| ||||| ||||||||||||    
T  45983291 tctgccaattcaacacagaaagtaacaagacataagtaaaataaat 45983246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 1e-28; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 34691333 - 34691474
Alignment:
Q  19 catatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagc 118  Q
    |||| |||||||||| | | || |||||||| ||||||||| ||| |  ||||||| |   ||||| |||||||||||||||||| ||||||||||||||    
T  34691333 catacttgaatgaacgcttcttcatctcagcagcttctttcccaagtgcctcaatggcactcttttcaatacctccaagcttgtaaatcaaatgaccagc 34691432  T
Q  119 agtggttgacttcccagagtcgacatgaccaataaacacaat 160  Q
     || |||||||||||||||| |||||||||||||||||||||    
T  34691433 cgtagttgacttcccagagttgacatgaccaataaacacaat 34691474  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 34713745 - 34713886
Alignment:
Q  19 catatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagc 118  Q
    |||| |||||||||| | | || |||||||| ||||||||| ||| |  ||||||| |   ||||| |||||||||||||||||| ||||||||||||||    
T  34713745 catacttgaatgaacgcttcttcatctcagcagcttctttcccaagtgcctcaatggcactcttttcaatacctccaagcttgtaaatcaaatgaccagc 34713844  T
Q  119 agtggttgacttcccagagtcgacatgaccaataaacacaat 160  Q
     || |||||||||||||||| |||||||||||||||||||||    
T  34713845 cgtagttgacttcccagagttgacatgaccaataaacacaat 34713886  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 16232682 - 16232823
Alignment:
Q  19 catatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagc 118  Q
    |||| |||||||||| ||| || |||||||| ||||||||| ||| |  ||||||| |   ||||| |||||||||||||||||| | ||||||||| ||    
T  16232682 catacttgaatgaacgcatcttcatctcagcagcttctttcccaagtgcctcaatggcactcttttgaatacctccaagcttgtaaagcaaatgaccggc 16232781  T
Q  119 agtggttgacttcccagagtcgacatgaccaataaacacaat 160  Q
    ||| |||||||||||||| | ||||||||||||||| |||||    
T  16232782 agtagttgacttcccagaattgacatgaccaataaagacaat 16232823  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 33861347 - 33861495
Alignment:
Q  19 catatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagc 118  Q
    |||| |||||||||||| |||  |||| ||| ||||||| |||||  |  |||||||| | ||| | ||||| ||||||||||| || ||||||||| |     
T  33861347 catacttgaatgaacacttgtcgatctgagcagcttcttcctcaagactgtcaatgacatgcttgtcaatacatccaagcttgtggagcaaatgaccggt 33861446  T
Q  119 agtggttgacttcccagagtcgacatgaccaataaacacaatattaata 167  Q
     |||||||||||||||||||| ||||||||||||| |||||| ||||||    
T  33861447 tgtggttgacttcccagagtcaacatgaccaataaccacaatgttaata 33861495  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 33861558 - 33861603
Alignment:
Q  210 tctgccaattcaacacagaaaacaacaggacattagtaaaataaat 255  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  33861558 tctgccaattcaacaaagaaaacaacaagacatgagtaaaataaat 33861603  T

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Target: chr4 (Bit Score: 58; Significance: 6e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 732 - 797
Target Start/End: Complemental strand, 50559174 - 50559109
Alignment:
Q  732 aattcaatcacaattcgtttcgtttgattctatttaaacaatttgttggttccgattctgattttg 797  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50559174 aattcaatcgcaattcgtctcgtttgattctatttaaacaatttgttggttccgattctgattttg 50559109  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 4231983 - 4232107
Alignment:
Q  27 aatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagcagtggttg 126  Q
    ||||||| | |||| |||||||| |||||||||||||| | |||||| ||   ||| | |||||||||||||||||||||||| |||||||  || ||||    
T  4231983 aatgaacgcttgttcatctcagcagcttctttctcaaacctctcaatcacacgcttgtcaatacctccaagcttgtagatcaagtgaccagtggtagttg 4232082  T
Q  127 acttcccagagtcgacatgaccaat 151  Q
    ||||||||||||||||||| |||||    
T  4232083 acttcccagagtcgacatggccaat 4232107  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 92 - 165
Target Start/End: Complemental strand, 19964696 - 19964623
Alignment:
Q  92 tccaagcttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaacacaatattaa 165  Q
    ||||||||||| |||||| ||||||| ||||||||||||||||||||| ||||||||||||| |||||| ||||    
T  19964696 tccaagcttgtggatcaagtgaccagtagtggttgacttcccagagtcaacatgaccaataaccacaatgttaa 19964623  T

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Target: chr5 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 90 - 181
Target Start/End: Original strand, 16352207 - 16352298
Alignment:
Q  90 cctccaagcttgtagatcaaatgaccagcagtggttgacttcccagagtcgacatgaccaataaacacaatattaataccaacctttccttt 181  Q
    |||||||||||||||| ||||||||| || ||||||||||||||||||| |||||||||||||| |||||| ||||||  ||||||| ||||    
T  16352207 cctccaagcttgtagaacaaatgaccggcggtggttgacttcccagagttgacatgaccaataaccacaatgttaatatgaaccttttcttt 16352298  T

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Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 7528867 - 7528735
Alignment:
Q  19 catatttgaatgaacacatgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagc 118  Q
    |||| |||||||||| | |||| |||||||| ||||| |||||||||| ||| || ||   ||| | ||||||||| |||||||||||||| |||||||     
T  7528867 catacttgaatgaacgcttgttcatctcagcagcttccttctcaaatctctcgatcacacgcttgtcaatacctcctagcttgtagatcaagtgaccagt 7528768  T
Q  119 agtggttgacttcccagagtcgacatgaccaat 151  Q
     || ||||| || |||||||||||||| |||||    
T  7528767 tgttgttgattttccagagtcgacatgtccaat 7528735  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 151
Target Start/End: Complemental strand, 7519478 - 7519364
Alignment:
Q  37 tgtttatctcagcggcttctttctcaaatcgctcaatgacgtcctttttaatacctccaagcttgtagatcaaatgaccagcagtggttgacttcccaga 136  Q
    |||| |||||||| ||||| ||||| |||| ||| || ||   ||| | ||||||||| |||||||||||||| |||||||  || ||||| || |||||    
T  7519478 tgttcatctcagcagcttccttctcgaatctctcgatcacacgcttgtcaatacctcctagcttgtagatcaagtgaccagttgttgttgattttccaga 7519379  T
Q  137 gtcgacatgaccaat 151  Q
    ||||||||| |||||    
T  7519378 gtcgacatgtccaat 7519364  T

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