View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7287_low_2 (Length: 394)
Name: NF7287_low_2
Description: NF7287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7287_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 39 - 387
Target Start/End: Original strand, 22867654 - 22868002
Alignment:
| Q |
39 |
gtaaacaatatttaacagaattcttctaaccatagtacatcttggggtttgcttattttatttaaagaaactttcaataaaaaagttggaaaggaagcat |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22867654 |
gtaaacaatatttaacagaattcttctaaccatagtacatcttggggtttgcttattttatttaaagaaactttcaataaaaaagttggaaaggaagcat |
22867753 |
T |
|
| Q |
139 |
ttagctgaaaaggttattttgtataagcaaaatcaaatggaattgtagttggacctataagcatatgcataatgacattgttgtccaataaaagaattat |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||| ||||||||||||||| |
|
|
| T |
22867754 |
ttagctgaaaaggttattttgtataagcaaaatcaaatggaattgtagttggacctataagcatatggataatgaaagtgttgttcaataaaagaattat |
22867853 |
T |
|
| Q |
239 |
gcagtaaaaattgaacctataaacattaaaaatagtcaagttgcaatccaatataacacgggaaaaattgatccgttgactttaccgtcatcaacaaaag |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22867854 |
gcagtaaaaattgaacctataaacattaaaaatagtcaagttccaatccaatataacacgggaaaaattgatccgttgactttaccgtcatcaacaaaag |
22867953 |
T |
|
| Q |
339 |
agcctctgttcgagcttcctcagtctgtggaacatgtatgttcatctca |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22867954 |
agcctctgttcgagcttcctcagtctgtggaacatgtatgttcatctca |
22868002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 21 - 383
Target Start/End: Original strand, 22836269 - 22836632
Alignment:
| Q |
21 |
aggtgtgaataatggcaggtaaacaatatttaacagaattcttctaaccatagtacatcttggggtttgcttattttatttaaagaaactttcaataaaa |
120 |
Q |
| |
|
|||||| |||||||| || |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||| ||| |
|
|
| T |
22836269 |
aggtgtaaataatggtagttaaacaatatttaacagaattcttctaaccgtagtacatcttgggaattgcttattttatttaaagaaattttcaatcaaa |
22836368 |
T |
|
| Q |
121 |
aagttggaaaggaagcatttagctgaaaaggttattttgtataagcaaaatcaaatggaattgtagttggacctataagcatatgcataatgacattgtt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| || |||| | |||| |
|
|
| T |
22836369 |
aagttggaaaggaagcatttagctgaaaaagttattttatataagcaaaatcaaatggaattgtagttatacctataagcatatgtat-atgaaagtgtt |
22836467 |
T |
|
| Q |
221 |
gtccaataaaagaattatgcagt-aaaaattgaacctataaacattaaaaatagtcaagttgcaatccaatataacac--gggaaaaattgatccgttga |
317 |
Q |
| |
|
| ||||||||||||||| ||| ||||| ||||||||||| |||| ||||||||||||||||||||||||| ||||| ||| ||||||||||| |||| |
|
|
| T |
22836468 |
atttaataaaagaattatgtagtaaaaaaatgaacctataagcatt-aaaatagtcaagttgcaatccaataaaacacgggggcaaaattgatcctttga |
22836566 |
T |
|
| Q |
318 |
ctttaccgtcatcaacaaaagagcctctgttcgagcttcctcagtctgtggaacatgtatgttcat |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
22836567 |
ttttaccgtcatcaacaaaagagcctctgttcgagcctcctcagtctgtggaacatgtaggttcat |
22836632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University