View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7287_low_3 (Length: 341)
Name: NF7287_low_3
Description: NF7287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7287_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 332
Target Start/End: Original strand, 52890501 - 52890823
Alignment:
| Q |
11 |
gaacctgtgggccaactacatcctcccgttgactctccccttcacctgtccccagccgcttatttctctcctctgacccctccacagcctccacgttccc |
110 |
Q |
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| T |
52890501 |
gaacctgtgggccacctacatcctcccgttgactctccccttcacctgtccccagccgcttatttctctcctctgacccctccacagcctccacgttccc |
52890600 |
T |
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| Q |
111 |
ctccccaattcctgaccc-ttctctgctaaagcctcatcctgatccgctctcccaaacgtcgcgtcatccattgtcccctcctttgccacatgtcacata |
209 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
52890601 |
ctccccaattcctgaccccttctctgctaaagcctcatcctgatccgctctcccaaacgtcacgtcatccattgtcccctcctttgccacatgtcatata |
52890700 |
T |
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| Q |
210 |
cccattagatcatttgaaaaactttcccccagtggggtcactatattctgacattctccaaaagcttcaccttgtatatccttttgtctcttcaacatta |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52890701 |
cccattagatcatttgaaaaactttcccccagtggggtcactatattctgacattctccaaaagcttcaccttgtatatccttttgtctcttcaacatta |
52890800 |
T |
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| Q |
310 |
actccacttctagcctagtatta |
332 |
Q |
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|||||||||||||||| |||||| |
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| T |
52890801 |
actccacttctagcctggtatta |
52890823 |
T |
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