View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7288_high_4 (Length: 456)
Name: NF7288_high_4
Description: NF7288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7288_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 114 - 438
Target Start/End: Original strand, 45207520 - 45207832
Alignment:
| Q |
114 |
aatatataaactcaagtatacaaattgaaatagacactaaaaagattttcgtgtagatataactaatagttttcttcatccataataatctttttagcgt |
213 |
Q |
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| T |
45207520 |
aatatataaactcaagtatgcaaattgaaatagacactaaaaagattttcgtgtagatataa----tagtagtcttcatc----ataatctttttagcgt |
45207611 |
T |
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| Q |
214 |
ctgtttgaatttacatatattaacataaacattcacgtacgtataaaattgtttgcatgaagagataccattttgggaaatgattaagaaagaaagaaag |
313 |
Q |
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| T |
45207612 |
ctgtttgaatttacatatattaacataaacattcacgtacgtataaaattgtttgcatgaagagataccattttgggaaatgattaaga----aagaaag |
45207707 |
T |
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| Q |
314 |
atcaaccagtaacaatggcagtgagaccagtagcatcgattccatgtgtgacttgttcagcagttgagttccatgaaaaaccagaaacacctttcttgct |
413 |
Q |
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| T |
45207708 |
atcaaccagtaacaatggcagtgagaccagtagcatcgattccatgtgtgacttgttcagcagttgagttccatgaaaaaccagaaacacctttcttgct |
45207807 |
T |
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| Q |
414 |
gaatggccacatattgcgtatcaat |
438 |
Q |
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| T |
45207808 |
gaatggccacatattgcgtatcaat |
45207832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 45207359 - 45207464
Alignment:
| Q |
14 |
tggacatcaaaattgtattcaaccagaagatataataaaattaaactaatttcacaagttgtcctaaagaacttattaacataagctgaaaacgtttatg |
113 |
Q |
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| T |
45207359 |
tggaaatcaaaattgtattcaaccaaaagatataataaaattaaactattttcacaagttgtcctaaagaacttattaacataagctgaaaacgtttatg |
45207458 |
T |
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| Q |
114 |
aatata |
119 |
Q |
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|||||| |
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| T |
45207459 |
aatata |
45207464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 318 - 425
Target Start/End: Original strand, 45232853 - 45232960
Alignment:
| Q |
318 |
accagtaacaatggcagtgagaccagtagcatcgattccatgtgtgacttgttcagcagttgagttccatgaaaaaccagaaacacctttcttgctgaat |
417 |
Q |
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| T |
45232853 |
accagtaacaatagcagtgaggccaattgcatcaattccatgagtgacttgttcagcagttgaactccctgagaaaccagaaattcctttcttgctgaat |
45232952 |
T |
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| Q |
418 |
ggccacat |
425 |
Q |
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| T |
45232953 |
ggccacat |
45232960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 318 - 425
Target Start/End: Original strand, 45214134 - 45214241
Alignment:
| Q |
318 |
accagtaacaatggcagtgagaccagtagcatcgattccatgtgtgacttgttcagcagttgagttccatgaaaaaccagaaacacctttcttgctgaat |
417 |
Q |
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|||||| ||||| |||||||| ||||| ||||| |||||||| || |||| |||||||||||| ||||||||||| ||||| || |||||| |||||||| |
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| T |
45214134 |
accagtgacaatagcagtgaggccagttgcatcaattccatgagtaacttcttcagcagttgacttccatgaaaacccagatacccctttcctgctgaat |
45214233 |
T |
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| Q |
418 |
ggccacat |
425 |
Q |
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|||||||| |
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| T |
45214234 |
ggccacat |
45214241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 325 - 425
Target Start/End: Original strand, 45249049 - 45249149
Alignment:
| Q |
325 |
acaatggcagtgagaccagtagcatcgattccatgtgtgacttgttcagcagttgagttccatgaaaaaccagaaacacctttcttgctgaatggccaca |
424 |
Q |
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||||| |||||||| |||| ||||| |||||||| || |||| |||||||||||| |||| ||| || |||||||| |||||||||||||||||||||| |
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| T |
45249049 |
acaatagcagtgagtccagatgcatcaattccatgagtaactttttcagcagttgaattccctgagaatccagaaacccctttcttgctgaatggccaca |
45249148 |
T |
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| Q |
425 |
t |
425 |
Q |
| |
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| |
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| T |
45249149 |
t |
45249149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 392
Target Start/End: Original strand, 45234450 - 45234522
Alignment:
| Q |
320 |
cagtaacaatggcagtgagaccagtagcatcgattccatgtgtgacttgttcagcagttgagttccatgaaaa |
392 |
Q |
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|||| |||||||||||||| |||| ||||| |||||||| |||||||||||||| ||||| |||||||||| |
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| T |
45234450 |
cagtgacaatggcagtgaggtcagttgcatcaattccatgagtgacttgttcagcggttgatctccatgaaaa |
45234522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 45214857 - 45214901
Alignment:
| Q |
262 |
ttgtttgcatgaagagataccattttgggaaatgattaagaaaga |
306 |
Q |
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||||||||||| ||||||||| ||||||||||| ||||||||||| |
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| T |
45214857 |
ttgtttgcatggagagatacccttttgggaaataattaagaaaga |
45214901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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