View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7288_high_5 (Length: 405)
Name: NF7288_high_5
Description: NF7288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7288_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 6972685 - 6972314
Alignment:
| Q |
18 |
tgtttcatgttgaaatattgctttgccnnnnnnnaatgcttttccaacaattttctaagttctctttacttcaacttttcactaatatataaagtaagtc |
117 |
Q |
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| T |
6972685 |
tgtttcatgttgaaatattgctttgcctttttttaatgcttttccaacaattttctaagttctctttacttcaacttttcactaatatataaagtaagtc |
6972586 |
T |
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| Q |
118 |
tcatacgtgcatgcttgcgtacaatagaatgtataaagcaagtcccatacgataagctctaatatattttttaccaactttccatctttttagcatatct |
217 |
Q |
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| T |
6972585 |
tcatacgtgcatgcttgcgtacaatagaatgtataaagtaagtctcatacgataagctctaatatattttttaccaactttccatctttttagcatatct |
6972486 |
T |
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| Q |
218 |
cttttggattttaaattaggtcatcaatagttactatttagattagttctagttaagttatttactgaatgttagttaatttgacctggagtatttgaat |
317 |
Q |
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| T |
6972485 |
ctgttggattttaaattaggtcatcaatagttactatttagattagttctagttaagttatttactgaatgttagttaatttgacctggagtatttgaat |
6972386 |
T |
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| Q |
318 |
tcaaaactttattgtgatatagtcatatatcaaactttgtttattttccgcagaactatgaattattatgtg |
389 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6972385 |
tcaaaactttattgtgatatagtcataaatcaaactttgtttattttccgcagaactatgaattattatgtg |
6972314 |
T |
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