View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7288_low_11 (Length: 391)
Name: NF7288_low_11
Description: NF7288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7288_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 206 - 374
Target Start/End: Original strand, 2499405 - 2499573
Alignment:
| Q |
206 |
ttttctttatatttaagatccgagagagtatcaattttcaacaagtgttaaaaatatgtcaggttgtttctaccattatattaaaaaagtatggttaaat |
305 |
Q |
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| T |
2499405 |
ttttctttatatttaggatcggagggagtatcaattttcaacaagtgttaaaaatatgccgggttgtttataccattatattaaaaaagtatggttaaat |
2499504 |
T |
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| Q |
306 |
attttttaatcctcataattatttcaatatatttaagaattgtttacaccgaaaaatagttgattggat |
374 |
Q |
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| T |
2499505 |
attttttaatcctcataattatttcaatatatttaagaattgtttacaccgaaaaatagttgattggat |
2499573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 2499139 - 2499313
Alignment:
| Q |
1 |
cattaatattgcagattcatgaatcaaccattttttctttg------cttttcatatatagttgtttgaataaacgtatttt-catgaaatctccatcta |
93 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| |
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| T |
2499139 |
cattaatattgcagattcatgaatcaaccattttttctttttcttttcttttcatatatagtggtttgaataaacgtatttttcatgaaatctctatcta |
2499238 |
T |
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| Q |
94 |
ttataacatcctagtcttttaaagttacaatccggtgaaagaaaaattgtaagttacatctgttatgatttcatt |
168 |
Q |
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| T |
2499239 |
ttataacatcctagtcttttaaagttacaatccagtgaaagaaaaattgtacgttacatgtgttatgatttcatt |
2499313 |
T |
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