View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7288_low_12 (Length: 350)
Name: NF7288_low_12
Description: NF7288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7288_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 342
Target Start/End: Original strand, 10539547 - 10539872
Alignment:
| Q |
17 |
aacttgttctgcatcaatcaaatacctaattgttaaaatggtacccaaaacataaaacaaaacaactaaaatcatcactaatcaaaatagggtttcattc |
116 |
Q |
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| T |
10539547 |
aacttgttctgcatcaatcaaatacctaattgttaaaatggtacccaaaacataaaacaaaacaactaaaatcatcactaatcaaaatagggtttcattc |
10539646 |
T |
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| Q |
117 |
aagcaatcttaaccacctcaatagttcttctaggcttgttagggttctgaggaggaggcaatttcttgagtgcagtaacagtaagcacaccatcttgaca |
216 |
Q |
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| T |
10539647 |
aagcaatcttaaccacctcaatagttcttctatgcttgttagggttctgaggaggaggcaatttcttgagtgcagtaacagtaaacaccccatcttgaca |
10539746 |
T |
|
| Q |
217 |
agcagccgaaacagcatcagcattagcattctcaggaagaagaaaccttccggtgaactttccaaaccttcttctttgctccatgatcaggtacttgacg |
316 |
Q |
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| T |
10539747 |
agcagccgaaacagcttcagcattagcatcttgaggaagaagaaaccttccggtgaacttcccaaaccttcttctttgctccatgttcaggtacttgacg |
10539846 |
T |
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| Q |
317 |
cagctaccttcttccctcttcttctc |
342 |
Q |
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| T |
10539847 |
cggccaccttcttccctcttcctctc |
10539872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 135 - 315
Target Start/End: Complemental strand, 10462462 - 10462282
Alignment:
| Q |
135 |
caatagttcttctaggcttgttagggttctgaggaggaggcaatttcttgagtgcagtaacagtaagcacaccatcttgacaagcagccgaaacagcatc |
234 |
Q |
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| T |
10462462 |
caatagttcttctaggcttgttagggttctgaggaggaggcaatttcttgagagcagtaacagtaagcaccccatctcgacacacagccgaaacagcatc |
10462363 |
T |
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| Q |
235 |
agcattagcattctcaggaagaagaaaccttccggtgaactttccaaaccttcttctttgctccatgatcaggtacttgac |
315 |
Q |
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| T |
10462362 |
agcattagcattctcaggaagaagaaaccttccactgaacttcccaaacattcttcgctgctccatgtttaggtacttgac |
10462282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 255
Target Start/End: Original strand, 3744752 - 3744841
Alignment:
| Q |
163 |
ctgaggaggaggcaatttcttgagtgcagtaacagtaagcacaccatcttgacaagcagccgaaacagcatcagcattagcattctcaggaag |
255 |
Q |
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| T |
3744752 |
ctgaggaggaggcaatttctgaa---cagtaacactcagaaccccatcttgacaaacagcagaaacagcatcagtattagcattctcaggaag |
3744841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 48302976 - 48303016
Alignment:
| Q |
189 |
cagtaacagtaagcacaccatcttgacaagcagccgaaaca |
229 |
Q |
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| T |
48302976 |
cagtaacagtaagaacaccatcttgacaaacagcagaaaca |
48303016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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