View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7288_low_13 (Length: 323)
Name: NF7288_low_13
Description: NF7288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7288_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 42163994 - 42163682
Alignment:
| Q |
1 |
ctaatgttctaataatgatataaagatatgtgctcactatcattttagtatcatatgatggctagaattggattaacctatggtggagtgaacatataga |
100 |
Q |
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| T |
42163994 |
ctaatgttctaatcatgatataaagatatgttctcactatcatgttagtatcatatgatggctagaattggattaacctatggtggagtgaacatataga |
42163895 |
T |
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| Q |
101 |
aa-----acaaaacaataacaagatttttgcttcattaagtcatttgttaatcatgtttaatgatttggagtctcttttttgacaggtgagagaactgga |
195 |
Q |
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| T |
42163894 |
aagaaaaaaaaaacaataacaagatttttgcttcattaagtcatttgttaatcatgtttaatgatttggagtctcttttttgacaggtgagagaactgga |
42163795 |
T |
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| Q |
196 |
aacaaatcccctgttcaattctgggcgtggatctgctttgacagcaaaaggaacagttgaaatggaggctagcatcatggatggtacaaagagaagatgt |
295 |
Q |
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| T |
42163794 |
aacaaatcccctgttcaattctgggcgtggatctgctttgacagcaaaaggaacagttgaaatggaggctagcataatggatggtacaaagagaagatgt |
42163695 |
T |
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| Q |
296 |
ggtgctgtatctg |
308 |
Q |
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| T |
42163694 |
ggtgctgtatctg |
42163682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 300
Target Start/End: Complemental strand, 5480776 - 5480656
Alignment:
| Q |
180 |
aggtgagagaactggaaacaaatcccctgttcaattctgggcgtggatctgctttgacagcaaaaggaacagttgaaatggaggctagcatcatggatgg |
279 |
Q |
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| T |
5480776 |
aggtgagggaattggaaacggatccactattcaattcgggtcgtggatctgccctgacggaaaaaggaacggtggaaatggaggctagcataatggatgg |
5480677 |
T |
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| Q |
280 |
tacaaagagaagatgtggtgc |
300 |
Q |
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| T |
5480676 |
accaaaaagacgatgcggtgc |
5480656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 209 - 308
Target Start/End: Original strand, 47170573 - 47170672
Alignment:
| Q |
209 |
ttcaattctgggcgtggatctgctttgacagcaaaaggaacagttgaaatggaggctagcatcatggatggtacaaagagaagatgtggtgctgtatctg |
308 |
Q |
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| T |
47170573 |
ttcaattctggccgtggatctgctctgacagcaaaaggaacggtggaaatggaggctagtatcatggatggtaccaagagaagatgtggtgctgtatctg |
47170672 |
T |
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