View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7288_low_14 (Length: 317)
Name: NF7288_low_14
Description: NF7288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7288_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 2620428 - 2620138
Alignment:
| Q |
18 |
atatcatagacatgaaatatgtgacatgttttcaaaacttgtgaatatttattacaaagatggacacaaacaattttcacatgataaagtcaaaatctaa |
117 |
Q |
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| T |
2620428 |
atatcatagacatgaaatatgtgacatgtttccaaaatttgtgaatatttattacaaagatggacacaaacaattttcacatgataaagtcaaaatctaa |
2620329 |
T |
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| Q |
118 |
agaaacttttaatatctgaaatgagaattcatgtagtaatgtgagataaagacataacagggaacagtaactgtcactcaccatgaaatagaggtatgga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2620328 |
agaaacttttaatatctgaaatgagaattcatgtagtaatgtgcgataaagacataacaggaaacagtaactgtcactcaccatgaaatagaggtatgga |
2620229 |
T |
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| Q |
218 |
aataaagatgctataggaagagctgtaacaatatcacnnnnnnnnnnnnnnnnncaaagtgagtaattagtgataggaactatgaaacacg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2620228 |
aataaagatgctataggaagagctgtaacaatatcacaaaagaaaaaagaaaaacaaagtgagtaattagtgataggaactatgaaacacg |
2620138 |
T |
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