View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7288_low_15 (Length: 315)
Name: NF7288_low_15
Description: NF7288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7288_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 10 - 297
Target Start/End: Complemental strand, 35296698 - 35296411
Alignment:
| Q |
10 |
gcacacacgattattgatattacgttctcactcgccattagtccttcctttcattgaagagaatggactccatgatgaaagagaattattgtcgtccatc |
109 |
Q |
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| T |
35296698 |
gcacacacaattattgatattacgttctcactcgccattagtccttcctttcattgaagagaatggactccatgatgaaagagaattattgtcgtccatc |
35296599 |
T |
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| Q |
110 |
aaaagtcaagtacctatccttcatagttgagggttttagaccaaaacatggcaccaaataaatattggattacaatatatagttgcaacatccataacac |
209 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
35296598 |
aaaagtcaagtacctatccttcatagctgagggttttagaccaaaacatggcaccaaataaatattgcattacaatatatagttgtaacatccataacac |
35296499 |
T |
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| Q |
210 |
agttatcagagtatttaacataatagcatctaataaagggaagaaactatcaataacagttaaagagaatgatgtcgaatgcccatga |
297 |
Q |
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| T |
35296498 |
agttatcagagtatttaacataatagcatctaataaagggaaggaactatcaataacagttaaagagaatgatgtcgaatgcccatga |
35296411 |
T |
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