View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7288_low_16 (Length: 260)

Name: NF7288_low_16
Description: NF7288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7288_low_16
NF7288_low_16
[»] chr1 (4 HSPs)
chr1 (10-242)||(19347705-19347937)
chr1 (144-232)||(13647177-13647265)
chr1 (150-223)||(19141775-19141848)
chr1 (144-228)||(16471324-16471408)
[»] chr6 (1 HSPs)
chr6 (144-232)||(22287022-22287110)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 19347937 - 19347705
Alignment:
Q  10 cgtgttggaggaaattgctggaacaactaagcacnnnnnnntgtttgatgcagttgttatggccaatgtatctagaaatccagacattgagagaattcaa 109  Q
    |||| ||||||||||||||| |||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19347937 cgtggtggaggaaattgctgaaacaactaagcacaaaaaaatgtttgatgcagttgttatggccaatgtatctagaaatccagacattgagagaattcaa 19347838  T
Q  110 atggagatcgcagagcagttgaatcttacatttattgagaagactattgttgggagagcaaaccgtctaagacaaagaatcaaagctgagaaaactatcc 209  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19347837 atggagattgcagagcagttgaatcttacatttattgagaagactattgttgggagagcaaaccgtctaagacaaagaatcaaagctgagaaaactatcc 19347738  T
Q  210 tagtcattctagatgatatttggcctacatttg 242  Q
    |||||||||||||||||||||||||||||||||    
T  19347737 tagtcattctagatgatatttggcctacatttg 19347705  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 13647177 - 13647265
Alignment:
Q  144 ttgagaagactattgttgggagagcaaaccgtctaagacaaagaatcaaagctgagaaaactatcctagtcattctagatgatatttgg 232  Q
    ||||| ||||| || |||| |||||||| || |||||||| ||||||||    ||||||| |||||| |||||| ||||||||||||||    
T  13647177 ttgaggagactgttcttggcagagcaaatcgcctaagacagagaatcaagatggagaaaaatatccttgtcattttagatgatatttgg 13647265  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 19141848 - 19141775
Alignment:
Q  150 agactattgttgggagagcaaaccgtctaagacaaagaatcaaagctgagaaaactatcctagtcattctagat 223  Q
    ||||||||||||| |||||| | || |||||||||||||||||    ||||||| ||||||  |||||||||||    
T  19141848 agactattgttggcagagcacaacgcctaagacaaagaatcaagatggagaaaagtatccttatcattctagat 19141775  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 16471408 - 16471324
Alignment:
Q  144 ttgagaagactattgttgggagagcaaaccgtctaagacaaagaatcaaagctgagaaaactatcctagtcattctagatgatat 228  Q
    ||||| ||||||||| ||| |||||| | || |||||||| ||||||||    ||||||| |||| | |||||||||||||||||    
T  16471408 ttgaggagactattgctggaagagcacatcgcctaagacagagaatcaagatggagaaaagtatcattgtcattctagatgatat 16471324  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 22287110 - 22287022
Alignment:
Q  144 ttgagaagactattgttgggagagcaaaccgtctaagacaaagaatcaaagctgagaaaactatcctagtcattctagatgatatttgg 232  Q
    ||||| ||||| || |||| |||||||| || |||||||| ||||||||    ||||||| |||||| |||||| ||||||||||||||    
T  22287110 ttgaggagactgttcttggcagagcaaatcgcctaagacagagaatcaagatggagaaaaatatccttgtcattttagatgatatttgg 22287022  T

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