View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7288_low_2 (Length: 812)
Name: NF7288_low_2
Description: NF7288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7288_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-156; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 274 - 693
Target Start/End: Original strand, 473796 - 474216
Alignment:
| Q |
274 |
cgtgcaatcgtgtttggagagcataagaactttagtttacttcaacaaaaaataataataataaagcctaggattgcatatataaataaggtttaccat- |
372 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
473796 |
cgtgcaatcgtgtttggagagcataagaactttagtttacttcaacaaaaaataataataaaaaagcctaggattgtatatataaataaggtttaccata |
473895 |
T |
|
| Q |
373 |
-ctctttatattcacccnnnnnnnnnnnnnnnnnnctttgagcaacgtgttttggaaagcaaagatgggatgtttagacatggagtattatatgccaata |
471 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
473896 |
tctctttatattcacccaaaaaaaaa---------ctttgagcaacgtgttttggaaagcaaagatgggatgtttagacatggagtattatatgccaata |
473986 |
T |
|
| Q |
472 |
atggttatggtattgatacagtttatatatgcaggtatgaatcttggcataagagtcacccttttggagggtatgagtcccaacgtatttgtagtatacc |
571 |
Q |
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| T |
473987 |
atggttatggtattgatacagtttatatatgcaggtatgaatcttggcataagagtcacccttttggagggtatgagtcccaacgtatttgtagtatacc |
474086 |
T |
|
| Q |
572 |
gtagtgcttttgcaaccatttttcttgctcccattgcttatttctctgggtacg--------nnnnnnnnnnnnngctttactatcaccctttcattctt |
663 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
474087 |
gtagtgcttttgcaaccatttttcttgctcccattgcttatttctctgggtacgtatatatatatatatatatatgctttactatcaccatttcattctt |
474186 |
T |
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| Q |
664 |
tgttattattcctcttatctcaagtgtatt |
693 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
474187 |
tgttattattcctcttatctcaagtgtatt |
474216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 52 - 157
Target Start/End: Original strand, 473585 - 473688
Alignment:
| Q |
52 |
caaaaacaaattggtctaccatcgttaaatgacttttcactacatacatttgatccaaatggtaagcaacttgagcccttaaacaatatactactcacct |
151 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
473585 |
caaaaacaaattggtctaccatcgttaaatgacttttcactacatacatttgatccaaatggtaagcaacttgaacccttaaaca--atactactcacct |
473682 |
T |
|
| Q |
152 |
tgtatg |
157 |
Q |
| |
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| |||| |
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| T |
473683 |
tatatg |
473688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 449 - 623
Target Start/End: Original strand, 466498 - 466672
Alignment:
| Q |
449 |
acatggagtattatatgccaataatggttatggtattgatacagtttatatatgcaggtatgaatcttggcataagagtcacccttttggagggtatgag |
548 |
Q |
| |
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|||||||||| || |||||||||| |||||| | ||||||||||| |||| ||||||| || |||||||| |||| | | ||||||||||||||||| |
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| T |
466498 |
acatggagtactacctgccaataatagttatgttgttgatacagttaatatttgcaggtcagactcttggcacaagaatggcacttttggagggtatgag |
466597 |
T |
|
| Q |
549 |
tcccaacgtatttgtagtataccgtagtgcttttgcaaccatttttcttgctcccattgcttatttctctgggta |
623 |
Q |
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||| | ||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||| || ||||| |
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| T |
466598 |
tccaaggatatttgtagtataccgtagtgcttttgcaaccattgttcttgctcccctcgcttatttatcagggta |
466672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 422 - 624
Target Start/End: Original strand, 479411 - 479613
Alignment:
| Q |
422 |
tttggaaagcaaagatgggatgtttagacatggagtattatatgccaataatggttatggtattgatacagtttatatatgcaggtatgaatcttggcat |
521 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| || | |||||||||| |||||| |||||| ||||||||||||||||| || | |||||| |
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| T |
479411 |
tttggaaagcaaagatgggatgtttagacatggagtactaccttccaataatggctatggtgttgatagagtttatatatgcaggtttgggtattggcac |
479510 |
T |
|
| Q |
522 |
aagagtcacccttttggagggtatgagtcccaacgtatttgtagtataccgtagtgcttttgcaaccatttttcttgctcccattgcttatttctctggg |
621 |
Q |
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|||| | ||||| ||||| |||| || | |||||||||| |||||| |||| ||||||||||| |||||||||| |||||||||| || ||| |
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| T |
479511 |
aagaattgtatttttgcagggtttgagccctaggatatttgtagtgtaccgtcatgctattgcaaccattcttcttgctcctgttgcttatttttccggg |
479610 |
T |
|
| Q |
622 |
tac |
624 |
Q |
| |
|
||| |
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|
| T |
479611 |
tac |
479613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 721 - 785
Target Start/End: Original strand, 474231 - 474295
Alignment:
| Q |
721 |
gtaggagaaactctgcctcttattccttaaatttaaggagtttttccttgattttcatgacctca |
785 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
474231 |
gtaggagaaactctgcctcttattccttaaatttaaggagtttttccttgattttcatgacctca |
474295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 723 - 795
Target Start/End: Original strand, 466748 - 466820
Alignment:
| Q |
723 |
aggagaaactctgcctcttattccttaaatttaaggagtttttccttgattttcatgacctcactgattgggt |
795 |
Q |
| |
|
||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
466748 |
aggagaaactctggctcatattccttgaatttaaggagtttttccttgattttcatgacctcactaattgggt |
466820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 723 - 795
Target Start/End: Original strand, 455041 - 455113
Alignment:
| Q |
723 |
aggagaaactctgcctcttattccttaaatttaaggagtttttccttgattttcatgacctcactgattgggt |
795 |
Q |
| |
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|||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||| |
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| T |
455041 |
aggagaaactctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctcactaattgggt |
455113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 532 - 614
Target Start/End: Original strand, 445781 - 445863
Alignment:
| Q |
532 |
cttttggagggtatgagtcccaacgtatttgtagtataccgtagtgcttttgcaaccatttttcttgctcccattgcttattt |
614 |
Q |
| |
|
||||||||||||||||| || ||||||||| | ||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
445781 |
cttttggagggtatgagcccggcggtatttgtaatgtaccgtaatgcttttgcaaccatttttcttgctccaattgcttattt |
445863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 556 - 623
Target Start/End: Original strand, 454889 - 454956
Alignment:
| Q |
556 |
gtatttgtagtataccgtagtgcttttgcaaccatttttcttgctcccattgcttatttctctgggta |
623 |
Q |
| |
|
|||||| |||| |||||| |||||||||||||||| |||||||||||||||||||||| |||||||| |
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|
| T |
454889 |
gtatttatagtttaccgtcatgcttttgcaaccattcttcttgctcccattgcttatttatctgggta |
454956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 722 - 795
Target Start/End: Original strand, 479698 - 479771
Alignment:
| Q |
722 |
taggagaaactctgcctcttattccttaaatttaaggagtttttccttgattttcatgacctcactgattgggt |
795 |
Q |
| |
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||||||||| |||| |||||||||||||||||||||||||||||| ||| | ||| | |||||||| ||||||| |
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| T |
479698 |
taggagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggt |
479771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 723 - 787
Target Start/End: Original strand, 446014 - 446078
Alignment:
| Q |
723 |
aggagaaactctgcctcttattccttaaatttaaggagtttttccttgattttcatgacctcact |
787 |
Q |
| |
|
||||||||||||||||| || |||||||| |||||||||||||||| ||| |||||||| ||||| |
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| T |
446014 |
aggagaaactctgcctcctactccttaaacttaaggagtttttcctggatattcatgacttcact |
446078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 421 - 515
Target Start/End: Original strand, 454762 - 454859
Alignment:
| Q |
421 |
ttttggaaagcaaagatgggat---gtttagacatggagtattatatgccaataatggttatggtattgatacagtttatatatgcaggtatgaatct |
515 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||| || | ||| || ||| ||||| |||| ||||||||||||| |||| |||||||| |
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| T |
454762 |
ttttggaaagtaaagatgggatattgtttagacatggagtactaccttccagtattggccatggtgttgacacagtttatatattcaggcatgaatct |
454859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 449 - 624
Target Start/End: Complemental strand, 27493931 - 27493756
Alignment:
| Q |
449 |
acatggagtattatatgccaataatggttatggtattgatacagtttatatatgcaggtatgaatcttggcataagagtcacccttttggagggtatgag |
548 |
Q |
| |
|
|||||||||| || | ||||||||||||||| ||||||||||||| |||||| |||| ||| |||||| | |||| | |||||||||||| |||| |
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| T |
27493931 |
acatggagtactacttaccaataatggttatgttattgatacagttaatatattcaggcttgactcttggtacaagaattgtacttttggagggtttgag |
27493832 |
T |
|
| Q |
549 |
tcccaacgtatttgtagtataccgtagtgcttttgcaaccatttttcttgctcccattgcttatttctctgggtac |
624 |
Q |
| |
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||| | |||||||||||||| || ||||||||||||||||||||||||||| |||||||||| || |||||| |
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| T |
27493831 |
tccaatggtatttgtagtatatcgctatgcttttgcaaccatttttcttgctcctgttgcttatttatcagggtac |
27493756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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