View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7288_low_3 (Length: 501)
Name: NF7288_low_3
Description: NF7288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7288_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 256 - 484
Target Start/End: Original strand, 30611307 - 30611535
Alignment:
| Q |
256 |
aattttttccctcaacaatctcttgaagcttcatgcagaagttatcaatataagatgactcaagatctttattaagcaacatctctctaatcttagtatg |
355 |
Q |
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| T |
30611307 |
aattctttccctcaacaatctcttgaagcttcatgcagaagttatcaatataagatgactcaagatctttattaagcaacatctctctaatcttagtatg |
30611406 |
T |
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| Q |
356 |
attagcccttactgtcttactaatttcatcctcatcattcatcacaatgctcacagctttgcaaacattatccttagtatagaatccatcttcacctttc |
455 |
Q |
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| T |
30611407 |
attagaccttactgtcttactaatttcatcctcatcattcatcacaatgctcacagctttgcaaacattatccttagtatagaatccatcttcacctttc |
30611506 |
T |
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| Q |
456 |
tcaacttccacaccaactttcaagttgtt |
484 |
Q |
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| T |
30611507 |
tcaacttccacaccaactttcaagttgtt |
30611535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 30610532 - 30610785
Alignment:
| Q |
9 |
tcgtgtttgatggttaagacttaagatgatacaattgaaaaagaaaattgagaggaatccaattgagagaattccctctctgaagatggaaaagtaaatg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30610532 |
tcgtgtttgatggttaagacttaagatgatacaattgaaaaaaaaaattgagaggaatccaattgagagaattccctttctgaagatggaaaagtaaatg |
30610631 |
T |
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| Q |
109 |
catgccgattcaaaag------------tatcatatcatgaacaactaaacttgcttagtaatatgaagatttcaagcttcactcagttttgcttgagag |
196 |
Q |
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| T |
30610632 |
catgccgattcaaaagttacacaatgattatcacatcatgaacaactaaacttgcttagtaatatgaagatttcaagcttcattcagttttgcttgagag |
30610731 |
T |
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| Q |
197 |
tcggacacttgccaactactcttcacactccatttcatcgaattaagatcaagtatt |
253 |
Q |
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| T |
30610732 |
tcggacacttgcca---actcttcacactccattttatcgaattaagatcaagtatt |
30610785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 266 - 481
Target Start/End: Original strand, 30593969 - 30594184
Alignment:
| Q |
266 |
ctcaacaatctcttgaagcttcatgcagaagttatcaatataagatgactcaagatctttattaagcaacatctctctaatcttagtatgattagccctt |
365 |
Q |
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|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||||| | ||||||||| ||| |
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| T |
30593969 |
ctcaacaatctcttgaagcttcttgcagaaattatcaatataagatgactcaagatccttattcagtaacatctctctaatcttggcatgattagctctt |
30594068 |
T |
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| Q |
366 |
actgtcttactaatttcatcctcatcattcatcacaatgctcacagctttgcaaacattatccttagtatagaatccatcttcacctttctcaacttcca |
465 |
Q |
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| T |
30594069 |
actgtcttactagtttcattttcatcatccatcacaatgctcacagctttacaaacactatccttagtatataatccatcttcatctttctcaacttcca |
30594168 |
T |
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| Q |
466 |
caccaactttcaagtt |
481 |
Q |
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| T |
30594169 |
caccaactttcaagtt |
30594184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 475
Target Start/End: Complemental strand, 35030189 - 35030101
Alignment:
| Q |
390 |
tcattcatcacaatgctcacagctttgcaaacattatccttagtatagaatccatcttca---cctttctcaacttccacaccaacttt |
475 |
Q |
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|||| ||||||||| ||||||||||||| ||||| || || ||| | || ||||||||| |||||||||||||||||||||||||| |
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| T |
35030189 |
tcatgcatcacaatcttcacagctttgcacacattttcttttgtaaacaacccatcttcatcacctttctcaacttccacaccaacttt |
35030101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 472
Target Start/End: Original strand, 35011226 - 35011315
Alignment:
| Q |
386 |
ctcatcattcatcacaatgctcacagctttgcaaacattatccttagtatagaatcca---tcttcacctttctcaacttccacaccaac |
472 |
Q |
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| T |
35011226 |
ctcatcatccatcacaatcttcacagctttgcacacactttcttttgtaaacaacccatcttcttcacctttctcaacttccacaccaac |
35011315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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