View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7288_low_5 (Length: 478)
Name: NF7288_low_5
Description: NF7288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7288_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 12 - 459
Target Start/End: Original strand, 35795612 - 35796061
Alignment:
| Q |
12 |
aacctgtgcaagacgtgggaaataaaccgagtataataattgatttggtactatcatatgatttacttagtctttgtcatgaaaaattgaataacttaga |
111 |
Q |
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| T |
35795612 |
aacctgtgcaagacgtgggaaataaaccgagtataataattgatttggtactatcatatgatttacttagtctttgtcatgaaaaattgaataacttaga |
35795711 |
T |
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| Q |
112 |
aacatatactttgaagcataccttgatttttgtttgactaagggaatatatactaagagaaaataaggcagctcatcatttacattgcagtcctgtaatt |
211 |
Q |
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| T |
35795712 |
aacatatactttgaagcataccttgatttttgtttgactaagggaatatatactaagagaaaataaggcagctcatcatttacattgcagtcctgtaatt |
35795811 |
T |
|
| Q |
212 |
ggaacctttctttgactaatgaacacaaaaacacatttcctacaaattgataagcaggtttcaaatggttatcaaagagcnnnnnnntttcacttttctt |
311 |
Q |
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| T |
35795812 |
ggaacctttctttgactaatgaacacaaaaacacatttcctacaaattgataagcaggtttcaaatggttatcaaagagcaaaaaaaattcacttttctt |
35795911 |
T |
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| Q |
312 |
atgcagtactctgcagtctgcacctagatcgaaaggtttt--cacagtcacgttatagcacacgacaattccagtaacttaaatgcagtttgctcatcta |
409 |
Q |
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| T |
35795912 |
atgcagtactctgcagtctgcacctagatcgaaaggttttcacacagtcatgttatagcacacgacaattccagtaatttaaatgcagtttgctcatcta |
35796011 |
T |
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| Q |
410 |
cagagtggttgatccctgttgaaggtattactgatgcaatgatgccttga |
459 |
Q |
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| T |
35796012 |
cagagtggttgatccctgttgaaggtattactgatgcaatgatgccttga |
35796061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 422
Target Start/End: Original strand, 35802897 - 35802964
Alignment:
| Q |
356 |
gtcacgttatagcacacgacaattccagtaactt-aaatgcagtttgctcatctacagagtggttgat |
422 |
Q |
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||||||| ||||||| ||| |||||||||||||| ||||||||||||||| |||||| |||||||||| |
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| T |
35802897 |
gtcacgtcatagcacccgagaattccagtaacttaaaatgcagtttgctcgtctacaaagtggttgat |
35802964 |
T |
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