View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7288_low_6 (Length: 466)
Name: NF7288_low_6
Description: NF7288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7288_low_6 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 19 - 466
Target Start/End: Complemental strand, 37382729 - 37382267
Alignment:
| Q |
19 |
ccagtaccaagatcaacaccccaagcagcatactgtgcataaagagatctcaaaaaagctcttcctgctcctaactttgtatttacactcatgaaaccat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37382729 |
ccagtaccaagatcaacaccccaagcagcatactgtgcataaagagatctcaaaaaagctcttcctgctcctaactttgtatttacactcatgaaaccat |
37382630 |
T |
|
| Q |
119 |
tagacatccatgcacaacgcctttcttggattgctatgtcttttgcataccatactcgaccagattcttgataagcagcaccctaggaaatcacgtgaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37382629 |
tagacatccatgcacaacgcctttcttggattgctatgtcttttgcataccatactcgaccagattcttgataagcagcaccctaggaaatcacgtgaaa |
37382530 |
T |
|
| Q |
219 |
aggtcaataagaacttttgttttaggttacgtgtctctttgaattggctt---------------atttgagtttatccacttacatacatgtgaattta |
303 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37382529 |
aggtcaataagaacttttgttttaggttacgtgtctctttgaattggcttattttgaattcgcttatttgagtttatccacttacatacatgtgaattta |
37382430 |
T |
|
| Q |
304 |
taatacagaattaaattgaagataaagttatagcagagaatcaaaataataccgttgtatctaggataggggtgtttgcattcacagcttgtgtgctaat |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37382429 |
taatacagaattaaattgaagataaagttatagcagagaatcaaaataataccgttgtatctaggataggggtgtttgcattcacagcttgtgtgctaat |
37382330 |
T |
|
| Q |
404 |
ccctctcataacatgaattccaaatttcaaacctaagctatgtactttctctgctactccact |
466 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
37382329 |
ccctctcataacatgaattccaaatttcaaacctaagctatgtactttcttagctacttcact |
37382267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 19 - 466
Target Start/End: Complemental strand, 37375390 - 37374925
Alignment:
| Q |
19 |
ccagtaccaagatcaacaccccaagcagcatactgtgcataaagagatctcaaaaaagctcttcctgctcctaactttgtatttacactcatgaaaccat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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|
| T |
37375390 |
ccagtaccaagatcaacaccccaagcagcatactgctcatgaagagatctcaaaaaagctctccctgctcctaaccttgtatttacactcatgaaaccat |
37375291 |
T |
|
| Q |
119 |
tagacatccatgcacaacgcctttcttggattgctatgtcttttgcataccatactcgaccagattcttgataagcagcaccctaggaaatcacgtgaaa |
218 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||| |||| |
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| T |
37375290 |
tagacatccatgaacaacgcctttgttggattgctatgtcttttgcataccatactcgaccaagttcttgataagcagcaccctagtatatcacaagaaa |
37375191 |
T |
|
| Q |
219 |
aggtcaataagaacttttgttttaggttacgtgtctc-------------tttgaattggcttatttgagtttatccacttacatacatgtgaatttata |
305 |
Q |
| |
|
||||||||||||||||||||||||| || || |||| ||| || | ||||||||||||| ||| ||| |||||| |||||||||||| |
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| T |
37375190 |
aggtcaataagaacttttgttttagatt--gtctctctgaatttgcttattttaaagttgcttatttgagttaatctactgacatacttgtgaatttata |
37375093 |
T |
|
| Q |
306 |
atacagaattaa----attgaagataaagttatagcagagaatcaaaataataccgt---tgtatctaggataggggtgtttgcattcacagcttgtgtg |
398 |
Q |
| |
|
||||| || ||| || || ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37375092 |
atacataaataaatatatagatgataaagttatagcagaaaatcaaaataataccgttgctgtatctaggataggggtgtttgcattcacagcttgtgtg |
37374993 |
T |
|
| Q |
399 |
ctaatccctctcataacatgaattccaaatttcaaacctaagctatgtactttctctgctactccact |
466 |
Q |
| |
|
||||||||| ||||| |||||||||||| || |||||||||||||| ||||||| |||||| |||| |
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|
| T |
37374992 |
ctaatccctgccataatatgaattccaaactttaaacctaagctatgcactttcttagctacttcact |
37374925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 21 - 229
Target Start/End: Complemental strand, 37360571 - 37360363
Alignment:
| Q |
21 |
agtaccaagatcaacaccccaagcagcatactgtgcataaagagatctcaaaaaagctcttcctgctcctaactttgtatttacactcatgaaaccatta |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| ||| | || ||||||||| ||||||||||||||||||||||||| |
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|
| T |
37360571 |
agtaccaagatcaacaccccaagcagcatactgctcatgaagggatctcaaaaatgctttcccggctcctaacgttgtatttacactcatgaaaccattt |
37360472 |
T |
|
| Q |
121 |
gacatccatgcacaacgcctttcttggattgctatgtcttttgcataccatactcgaccagattcttgataagcagcaccctaggaaatcacgtgaaaag |
220 |
Q |
| |
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| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||| | |||||| |
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| T |
37360471 |
gtcatccatccacaacgcctttcttggattgctatgtcttttgcatgccatactcgaccagattcttgataagcagcaccctgtgatatcgcaagaaaag |
37360372 |
T |
|
| Q |
221 |
gtcaataag |
229 |
Q |
| |
|
||||||||| |
|
|
| T |
37360371 |
gtcaataag |
37360363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 37367491 - 37367699
Alignment:
| Q |
21 |
agtaccaagatcaacaccccaagcagcatactgtgcataaagagatctcaaaaaagctcttcctgctcctaactttgtatttacactcatgaaaccatta |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| ||| | || ||||||||| ||||||||||||||||||||||||| |
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|
| T |
37367491 |
agtaccaagatcaacaccccaagcagcatactgctcatgaagggatctcaaaaatgctttcccggctcctaacgttgtatttacactcatgaaaccattt |
37367590 |
T |
|
| Q |
121 |
gacatccatgcacaacgcctttcttggattgctatgtcttttgcataccatactcgaccagattcttgataagcagcaccctaggaaatcacgtgaaaag |
220 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| || ||| | |||||| |
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|
| T |
37367591 |
gtcatccatccacaacgcctttcttggattgctatgtcttttgcatgccatactcgacctgattcttgataagcagcaccctgtgatatcgcaagaaaag |
37367690 |
T |
|
| Q |
221 |
gtcaataag |
229 |
Q |
| |
|
||||||||| |
|
|
| T |
37367691 |
gtcaataag |
37367699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 256 - 453
Target Start/End: Complemental strand, 37360318 - 37360116
Alignment:
| Q |
256 |
tttgaattggcttatttgagtttatccacttacatacatgtgaatttataatacagaattaaatt--gaagataaagttatagcagagaatcaaaataat |
353 |
Q |
| |
|
|||||| | ||||||| ||||||||| ||| | |||| ||||||| |||||| || || || || |||||||||||||||||||| |||||||||||| |
|
|
| T |
37360318 |
tttgaaattgcttattcgagtttatctactgatatacttgtgaatgtataatgcataaatatatatagaagataaagttatagcagaaaatcaaaataat |
37360219 |
T |
|
| Q |
354 |
accgttgt---atctaggataggggtgtttgcattcacagcttgtgtgctaatccctctcataacatgaattccaaatttcaaacctaagctatgtactt |
450 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||| |
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|
| T |
37360218 |
accgttgttgtatctaggataggggtgtttgcattcacagcttgtgtgctaatccctgccataatatgaattccaaacttcaaacctaagctatgtactt |
37360119 |
T |
|
| Q |
451 |
tct |
453 |
Q |
| |
|
||| |
|
|
| T |
37360118 |
tct |
37360116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 321 - 453
Target Start/End: Original strand, 37367813 - 37367948
Alignment:
| Q |
321 |
gaagataaagttatagcagagaatcaaaataataccgttg---tatctaggataggggtgtttgcattcacagcttgtgtgctaatccctctcataacat |
417 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
37367813 |
gaagataaagttatagcagaaaatcaaaataataccgttgttgtatctaggataggggtgtttgcattcacagcttgtgtgctaatccctgccataatat |
37367912 |
T |
|
| Q |
418 |
gaattccaaatttcaaacctaagctatgtactttct |
453 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |
|
|
| T |
37367913 |
gaattccaaacttcaaacctaagctatgtactttct |
37367948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 37386342 - 37386437
Alignment:
| Q |
22 |
gtaccaagatcaacacccc-aagcagcatactgtgcataaagagatctcaaaaaagctcttcctgctcctaactttgtatttacactcatgaaacc |
116 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||| ||||| |||||| ||| |||||| ||||||||||| |
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|
| T |
37386342 |
gtaccaagatcaacacccccaagcagcatactgctcataaagggatctcaaaaaagctctccctgcacctaacgttgcatttactctcatgaaacc |
37386437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 41229855 - 41230037
Alignment:
| Q |
22 |
gtaccaagatcaacaccccaagcagcatactgtgcataaagagatctcaaaaaagctcttcctgctcctaactttgtatttacactcatgaaaccattag |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| ||||| ||||| |||||| |||||||||||||||||| |
|
|
| T |
41229855 |
gtaccaagatcaacaccccaagcagcatactgctcataaagggatctcaaaaacgctctccctgcccctaatgttgtatctacactcatgaaaccattct |
41229954 |
T |
|
| Q |
122 |
acatccatgcacaacgcctttcttggattgctatgtcttttgcataccatactcgaccagattcttgataagcagcaccctag |
204 |
Q |
| |
|
||||||| ||||| |||| | ||||||||||||||||||||| ||| || ||||||||||||||||||||| | |||||| |
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|
| T |
41229955 |
gcatccatccacaagctctttttgggattgctatgtcttttgcatgccacacacgaccagattcttgataagcaccgccctag |
41230037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 359 - 466
Target Start/End: Original strand, 41230234 - 41230341
Alignment:
| Q |
359 |
tgtatctaggataggggtgtttgcattcacagcttgtgtgctaatccctctcataacatgaattccaaatttcaaacctaagctatgtactttctctgct |
458 |
Q |
| |
|
||||||||| |||||||| ||||||| ||||||||||||||| ||||||||||||| |||||||||||| || |||||||||||||||||||||| ||| |
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| T |
41230234 |
tgtatctagaataggggtatttgcatccacagcttgtgtgcttatccctctcataatatgaattccaaactttaaacctaagctatgtactttcttagct |
41230333 |
T |
|
| Q |
459 |
actccact |
466 |
Q |
| |
|
||| |||| |
|
|
| T |
41230334 |
acttcact |
41230341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 357 - 436
Target Start/End: Complemental strand, 39243538 - 39243459
Alignment:
| Q |
357 |
gttgtatctaggataggggtgtttgcattcacagcttgtgtgctaatccctctcataacatgaattccaaatttcaaacc |
436 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||| || ||||| |
|
|
| T |
39243538 |
gttgtatctaggataggcgtgtttgcattgacagcttgtgtgcttatccctctcataacatgaatcccaaactttaaacc |
39243459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 39243922 - 39243756
Alignment:
| Q |
21 |
agtaccaagatcaacaccccaagcagcatactgtgcataaagagatctcaaaaaagctcttcctgctcctaactttgtatttacactcatgaaaccatta |
120 |
Q |
| |
|
|||||||| |||||||||||| |||||||||| ||||||| || |||||||| ||| | || || || ||| | |||||||||||||||||||||| | |
|
|
| T |
39243922 |
agtaccaaaatcaacaccccattcagcatactgcacataaagggacctcaaaaaggctttgccagcacccaacgtagtatttacactcatgaaaccatga |
39243823 |
T |
|
| Q |
121 |
gacatccatgcacaacgcctttcttggattgctatgtcttttgcataccatactcgaccagattctt |
187 |
Q |
| |
|
| |||||| ||||| |||||| |||| ||||||||||||||||||| | ||| |||||||||| |
|
|
| T |
39243822 |
gtcatccagccacaagccctttcagggatccctatgtcttttgcataccacaatcggccagattctt |
39243756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 281
Target Start/End: Complemental strand, 50998696 - 50998668
Alignment:
| Q |
253 |
ctctttgaattggcttatttgagtttatc |
281 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
50998696 |
ctctttgaattggcttatttgagtttatc |
50998668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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