View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7288_low_8 (Length: 436)
Name: NF7288_low_8
Description: NF7288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7288_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 43438503 - 43438269
Alignment:
| Q |
1 |
acaaaaatgaaacccttgtatagcacaaacactctcttactcctcctttcactattcctcctccacttagcaccatacctttctgcttcatcttctcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43438503 |
acaaaaatgaaacccttgtatagcacaaacactctcttactcctcctttcactattcctcctccacttagcaccatacctttctgcttcatcttctcaaa |
43438404 |
T |
|
| Q |
101 |
gagacccaacttcacaacttctcaactttaaacaatctctcccaaacccatctcttctccataactggctcccaaataataacccatgttcattcactgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43438403 |
gagacccaacttcacaacttctcaactttaaacaatctctcccaaacccatctcttctccataactggctcccaaataataacccatgttcattcactgg |
43438304 |
T |
|
| Q |
201 |
tatcacctgcaaccaaaccaccataacttctatag |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
43438303 |
tatcacctgcaaccaaaccaccataacttctatag |
43438269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University