View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7289_high_1 (Length: 594)
Name: NF7289_high_1
Description: NF7289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7289_high_1 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 526; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 18 - 594
Target Start/End: Original strand, 8719410 - 8719986
Alignment:
| Q |
18 |
gaattaatctagaaagtttgaaatgctatgtgctaaccaaactcttcctccagcttcttcttatgctcaaaagtcaaataaaaacattggtcatgaatag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8719410 |
gaattaatctagaaagtttgaaatgctatgtgctaaccaaactcttcctccagcttcttcttatgctcaaaagtcaaataaaaacattggtcatgaatag |
8719509 |
T |
|
| Q |
118 |
gatgaataacctaagaaacaaagaagttagtgagactcaaacatgtaaaaataaagataagtaaaaatgttaaatatatgtgatagtataatacctcttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8719510 |
gatgaataacctaagaaacaaagaagttagtgagactcaaacatgtaaaaataaagataagtaaaaatgttaaatatatgtgatagtataatacctcttt |
8719609 |
T |
|
| Q |
218 |
tactggagaacaataagtatgcctaaattctttggaatgtcttctaagatatgcttctaactttgcagtatcttctcttcggaatatgtcccaaagtgca |
317 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8719610 |
tactggagaacaataagtatgcctaaattctttggaatgtcttctaagatatgtttctaactttgcagtatcttctcttcggaatatgtcccaaagtgca |
8719709 |
T |
|
| Q |
318 |
ccagctgtttctgatgtatcttctgtgattgatggaacttcatttggaaatagctttccattgatctcaaaatgacctccattatcttgaacaagacctt |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8719710 |
ccagctgtttctgatgtatcttctgtgattgatggaacttcatttggaaatagctttccattgatctcaaaatgacctccattatcttgaacaagacctt |
8719809 |
T |
|
| Q |
418 |
ctttcttatcttgagtcttatgtgcgcnnnnnnnnnnnnnaatagcataaagttgttcatctgttaatttcacctcacttatatgagtcaaaatattgac |
517 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8719810 |
ctttcttatcttgagtcttatgtgcgctttttatttttttaatagcataaagttgttcatctgttaatttcacctcacttatatgagtcaaaatattgac |
8719909 |
T |
|
| Q |
518 |
ctgtcaaaattattgaacaataaagtaaacttagtaccatcatatacttagtaccatcataaaatttatagtataat |
594 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
8719910 |
ctgtcaaaattattgaacaataaagtaaacttagtaccatcatatacttagtaacatcataaaatttataatataat |
8719986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 421
Target Start/End: Original strand, 8673118 - 8673520
Alignment:
| Q |
19 |
aattaatctagaaagtttgaaatgctatgtgctaaccaaactcttcctccagcttcttcttatgctcaaaagtcaaataaaaacattggtcatgaatagg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8673118 |
aattaatctagaaagtttgaaatgctatgtgctaaccaaactcttcatccagcttcttcttatgctcaaaagtcaaataaaaacattggtcatgaatagg |
8673217 |
T |
|
| Q |
119 |
atgaataacctaagaaacaaagaagttagtgagactcaaacatgtaaaaataaagataagtaaaaatgttaaatatatgtgatagtataatacctctttt |
218 |
Q |
| |
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||| | |||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| || | | |||||||| ||||||||||||||| |
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| T |
8673218 |
atggacaacctaagcaacaaagaagttagtgagactcaaacatgtaaaaataaatataagcggaaatattgatgaaatgtgataatataatacctctttt |
8673317 |
T |
|
| Q |
219 |
actggagaacaataagtatgcctaaattctttggaatgtcttctaagatatgcttctaactttgcagtatcttctcttcggaatatgtcccaaagtgcac |
318 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8673318 |
actggagaacaacaagtatgcctaaattctttggaatattttctaagatatgcttctaactttgcagtatcttctcttcggaatatgtcccaaagtgcac |
8673417 |
T |
|
| Q |
319 |
cagctgtttctgatgtatcttctgtgattgatggaacttcatttggaaatagctttccattgatctcaaaatgacctccattatcttgaacaagaccttc |
418 |
Q |
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||| ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| |||| ||||||||||||||||||||||||| || |
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| T |
8673418 |
cagttgtttctaatgtatcttctgtgattggtggaacttcatttagaaatagctttcctttgatcttaaaaggacctccattatcttgaacaagaccctc |
8673517 |
T |
|
| Q |
419 |
ttt |
421 |
Q |
| |
|
||| |
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|
| T |
8673518 |
ttt |
8673520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 20 - 352
Target Start/End: Original strand, 8591576 - 8591901
Alignment:
| Q |
20 |
attaatctagaaagtttgaaatgctatgtgctaaccaaactcttcctccagcttcttcttatgctcaaaagtcaaataaaaacattggtcatgaatagga |
119 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8591576 |
attaagctagaaagtttgaaatgctacgtgctaaccaaattctttctccagcttcttcttatggtcaaaagtcaaataaaaacattggtcatgaatagga |
8591675 |
T |
|
| Q |
120 |
tgaataacctaagaaacaaagaagttagtgagactcaaacatgtaaaaataaagataagtaaaaatgttaaatatatgtgatagtataatacctctttta |
219 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||| ||||||||| ||| ||| | | ||| |||| |||||||||| || || |
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| T |
8591676 |
tgaataacctaagcaacaaagaagttagtgagactcaaatatg-------caagataagtggaaacgttgatgaaatgcgataatataataccttttcta |
8591768 |
T |
|
| Q |
220 |
ctggagaacaataagtatgcctaaattctttggaatgtcttctaagatatgcttctaactttgcagtatcttctcttcggaatatgtcccaaagtgcacc |
319 |
Q |
| |
|
| ||||| || |||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
8591769 |
ccggagagaaaaaagtatgcctaaattctttgcaatgtttttgaagatatgcttctaactttgcagtatcttctcttttaaatatgtcccaaagagcacc |
8591868 |
T |
|
| Q |
320 |
agctgtttctgatgtatcttctgtgattgatgg |
352 |
Q |
| |
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||||||||| ||| | |||| |||||| ||||| |
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| T |
8591869 |
agctgtttcagatatttcttttgtgatagatgg |
8591901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 458 - 566
Target Start/End: Original strand, 8674789 - 8674897
Alignment:
| Q |
458 |
aatagcataaagttgttcatctgttaatttcacctcacttatatgagtcaaaatattgacctgtcaaaattattgaacaataaagtaaacttagtaccat |
557 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8674789 |
aatagcataaatttgctcatctgttaatttcacctcagttatatgagtcaaaatattaacctgtcaaaattattgaacaataaagtaaacttagtaccat |
8674888 |
T |
|
| Q |
558 |
catatactt |
566 |
Q |
| |
|
| ||||||| |
|
|
| T |
8674889 |
cttatactt |
8674897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 458 - 557
Target Start/End: Original strand, 8591977 - 8592076
Alignment:
| Q |
458 |
aatagcataaagttgttcatctgttaatttcacctcacttatatgagtcaaaatattgacctgtcaaaattattgaacaataaagtaaacttagtaccat |
557 |
Q |
| |
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||||||| ||||||| || || ||||||||||||||| |||||||||||| ||| || |||||||||| |||||||||||||||||||| |||||||||| |
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| T |
8591977 |
aatagcacaaagttgatcttcagttaatttcacctcagttatatgagtcagaatgtttacctgtcaaagttattgaacaataaagtaaatttagtaccat |
8592076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 423
Target Start/End: Complemental strand, 23439773 - 23439372
Alignment:
| Q |
19 |
aattaatctagaaagtttgaaatgctatgtgctaaccaaactcttcctccagcttcttcttatgctcaaaagtcaaataaaaacattggtcatgaatagg |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23439773 |
aattaatatagaaagtttgaaatgctatgtgctaaccaaactcttccttcagcttctt---atgctcaaaagtcaaataaaaacattggtcatgaatagg |
23439677 |
T |
|
| Q |
119 |
atgaataacctaagaaacaaagaagttagtgagactcaaacatgtaaaaataaagataagtaaaaatgttaaatatatgtgatagtataatacctctttt |
218 |
Q |
| |
|
||| | |||||||| || |||||||||||||||||||||||||||||||||||| ||||| ||| ||| | | |||||||| ||||||||||||||| |
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|
| T |
23439676 |
atggacaacctaagcaaaaaagaagttagtgagactcaaacatgtaaaaataaatataagcggaaacgttgatgaaatgtgataatataatacctctttt |
23439577 |
T |
|
| Q |
219 |
actggagaacaataagtatgcctaaattctttggaatgtcttctaagatatgcttctaactttgcagtatcttctcttcggaatatgtcccaaagtgcac |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
23439576 |
actggagaacaataagtatgcctaaattctttggaatattttctaagatatgcttctaactttgcagtatcttctcttcgaaatatgtcccaaagtgcac |
23439477 |
T |
|
| Q |
319 |
cagctgtttctgatgtatcttctgtgattgatggaacttcatttggaaatagctttccattgatctcaaaatgacctccattatcttgaacaagaccttc |
418 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||| || |
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| T |
23439476 |
tagctgtttctgatgtatcttctgtgattggtggaacttcatttggaaatagctttgctttgatctcaaaaggacctccattatcttgaacaagaccctc |
23439377 |
T |
|
| Q |
419 |
tttct |
423 |
Q |
| |
|
||||| |
|
|
| T |
23439376 |
tttct |
23439372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 458 - 516
Target Start/End: Complemental strand, 23437951 - 23437893
Alignment:
| Q |
458 |
aatagcataaagttgttcatctgttaatttcacctcacttatatgagtcaaaatattga |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
23437951 |
aatagcataaagttgttcatctgttaatttcacctcagttatatgagtcaaaatattga |
23437893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 55410251 - 55410343
Alignment:
| Q |
50 |
ctaaccaaactcttcctccagcttcttcttatgctcaaaagtcaaataaaaacattggtcatgaataggatgaataacctaagaaacaaagaa |
142 |
Q |
| |
|
|||||||||||| |||| || ||| ||||| ||||| ||||||||||||||||||||||||||||| ||||| | ||||||| ||||||||| |
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| T |
55410251 |
ctaaccaaactcctccttcaacttattcttgtgctccaaagtcaaataaaaacattggtcatgaattggatgtacaacctaaccaacaaagaa |
55410343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 310
Target Start/End: Original strand, 55410425 - 55410510
Alignment:
| Q |
225 |
gaacaataagtatgcctaaattctttggaatgtcttctaagatatgcttctaactttgcagtatcttctcttcggaatatgtccca |
310 |
Q |
| |
|
||||||||||||||||| |||||||| || ||| |||||||||||||| |||||||| |||| || ||||| || ||||| ||||| |
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| T |
55410425 |
gaacaataagtatgcctgaattctttcgagtgttttctaagatatgctcctaacttttcagtgtcctctctccgaaatatatccca |
55410510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 537
Target Start/End: Original strand, 5116746 - 5116802
Alignment:
| Q |
481 |
ttaatttcacctcacttatatgagtcaaaatattgacctgtcaaaattattgaacaa |
537 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||| |||| | || |||||||||||| |
|
|
| T |
5116746 |
ttaattttacctcacttgtatgagtcaaaatattcacctatgaacattattgaacaa |
5116802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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