View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7289_high_2 (Length: 498)
Name: NF7289_high_2
Description: NF7289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7289_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Complemental strand, 2392053 - 2391565
Alignment:
| Q |
1 |
ggaacatacaaaacattgcaaataaaagaaaaactcaaagttggataaatcatatctaacttaataaatcaatacctatatttgcaggaacaaacatgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2392053 |
ggaacatacaaaacattgcaaataaaagaaaaactcaaagttggataaatcatatctaacttaataaatcaatacctatatttgcaggaacaaacatgga |
2391954 |
T |
|
| Q |
101 |
aaatctgttaaagataaataaatatgtgaaaccccaaaagtatggttgagaccgaaattctcattcttaaattcaataataatgcaatatgccaagtgct |
200 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2391953 |
aaatctgt-aaagataaataaatatgtgaaactccaaaagtatggttgagaccgaaattctcattcttaaattcaataataatgcaatatgccaagtgct |
2391855 |
T |
|
| Q |
201 |
aaacatgtataaacaagtgaaccgaattttgtaaataagacaaaaatatactccaaactaaaagactttgttattttcgtcatgccgtcaacttgttccg |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2391854 |
aaacatgtataaacaagtgaaccaaattttgtaaataagacaaaaatatactccaaactaaaagactttgttattttcgtcatgccgtcaacttgttccg |
2391755 |
T |
|
| Q |
301 |
ttaaagtgtatgggttgtcaccttagctaccaacatgacactatgacagaatgagttgacagaatgatgaaaataacttacttttataattgcaggtaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2391754 |
ttaaagtgtatgggttgtcaccttagctaccaacatgacactatgacagaatgagttgacagaatgattaaaataacttacttttataattgcaggtaat |
2391655 |
T |
|
| Q |
401 |
tttgaataatgtgcaagtatttcagtgctcttgcaaaccctgggaattatcactatggagtatatcatcaccatctaggttattcttctc |
490 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2391654 |
tttgaataatgtgcaagtatctcggtgctcttgcaaaccctgggaattatcactatggagtatatcatcaccatctaggttattcttctc |
2391565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 70 - 257
Target Start/End: Complemental strand, 2382262 - 2382072
Alignment:
| Q |
70 |
caatacctatatttgcaggaacaaacatggaaaatctgtta-aagataaataaatatgtgaaaccccaaaagtatggttgagaccgaaattctcattctt |
168 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| | ||||||||| |||||||||||||||||||||| |||||||||| |||||||||| ||| |
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| T |
2382262 |
caatacctatatttgcaggaacaaacatgaaaaatctgtcagaagataaatgaatatgtgaaaccccaaaagtagggttgagacccaaattctcatcctt |
2382163 |
T |
|
| Q |
169 |
aaattcaataataatgcaatatgccaagtgctaaacatgtataaacaagtgaaccg---aattttgtaaataagacaaaaatatactccaaa |
257 |
Q |
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|| |||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| |||||||||||| |||||| |
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| T |
2382162 |
aatgtcaataataatgcaatatgccaagtgcttaacatgtataaacaagtgaatcatcaaattttgtaaata-gacaaaaatatattccaaa |
2382072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 2380929 - 2380824
Alignment:
| Q |
1 |
ggaacatacaaaacattg--caaataaaagaaaaac-tcaaagttggataaatcatatctaacttaataaatcaatacctatatttgcaggaacaaacat |
97 |
Q |
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|||| ||||||||||||| ||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2380929 |
ggaatatacaaaacattgagcaaataaaataaaaacctcatagttggataaatcatatctaacttaataaatcaatacctatatttgcaggaacaaacat |
2380830 |
T |
|
| Q |
98 |
ggaaaa |
103 |
Q |
| |
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| |||| |
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|
| T |
2380829 |
gaaaaa |
2380824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 126 - 257
Target Start/End: Complemental strand, 2383268 - 2383138
Alignment:
| Q |
126 |
gtgaaaccccaaaagtatggttgagaccgaaattctcattcttaaattcaataataatgcaatatgccaagtgctaaacatgtataaacaagtgaac--- |
222 |
Q |
| |
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|||||||| ||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
2383268 |
gtgaaaccggaaaagtaaggttgagacccaaattctcattcttaatgtcaataataatgcaatatgccaagtgcttaacatgtataaagaagtgaaccat |
2383169 |
T |
|
| Q |
223 |
cgaattttgtaaataagacaaaaatatactccaaa |
257 |
Q |
| |
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| ||||||||||||| |||||||||||||||| |
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| T |
2383168 |
caaattttgtaaata----aaaaatatactccaaa |
2383138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 2383700 - 2383620
Alignment:
| Q |
6 |
atacaaaacattgca---aataaaagaaa-aactcaaagttggataaatcatatctaacttaataaatcaatacctatatttgca |
86 |
Q |
| |
|
||||||||||||||| |||||||| || ||||||||||||||||||||||||||| ||||||| | |||||||||||||| |
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| T |
2383700 |
atacaaaacattgcagcaaataaaagtaataactcaaagttggataaatcatatcta----aataaataactacctatatttgca |
2383620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 2546086 - 2546128
Alignment:
| Q |
53 |
tatctaacttaataaatcaatacctatatttgcaggaacaaac |
95 |
Q |
| |
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||||||||| ||||||||||||| |||||||||| |||||||| |
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|
| T |
2546086 |
tatctaactcaataaatcaatacatatatttgcaagaacaaac |
2546128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 39535846 - 39535804
Alignment:
| Q |
29 |
aaaaactcaaagttggataaatcatatctaacttaataaatca |
71 |
Q |
| |
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|||||||||||||||||||||| |||||||||| |||| |||| |
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| T |
39535846 |
aaaaactcaaagttggataaataatatctaactcaatacatca |
39535804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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