View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7289_high_3 (Length: 440)
Name: NF7289_high_3
Description: NF7289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7289_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 7 - 422
Target Start/End: Complemental strand, 31795081 - 31794663
Alignment:
| Q |
7 |
tttggtggttaataattaggttttaatgagacagagaaaggatgctgtggtacagggaatatagaagttggaattttgtgcaacccttacagcataaaca |
106 |
Q |
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| T |
31795081 |
tttggtggttaataattaggttttaatgagacagagaaaggatgctgtggtacagggaatatagaagttggaattttgtgcaacccttacagcataaaca |
31794982 |
T |
|
| Q |
107 |
catgttcaaatccttcagattacgtattttgggacagttatcatcctacagagaaagcttacaatgtgcttagttcacttgtacttgatnnnnnnntcaa |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31794981 |
catgttcaaatccttcagattacgtattttgggacagttatcatcctacagagaaagcttacaatgtgcttagttcacttgtacttgataaaaaaatcaa |
31794882 |
T |
|
| Q |
207 |
ggacttcttctaaatacacttttgatctcattctaaattactatttaataatgtattt---nnnnnnnnnnnnnnnnnnctaatagtgtgattacataat |
303 |
Q |
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| T |
31794881 |
ggacttcttctaaatacacttttgatctcattctaaattactatttaataatgtatttttcttcttcttcttcttcttcctaatagtgtgattacataat |
31794782 |
T |
|
| Q |
304 |
aagatgtctaaacgataccatataacatgcattgtgatgagaatatatattatctagcatatttatttcaatttgaacaattatgatgttaggatgatat |
403 |
Q |
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| T |
31794781 |
aagatgtctaaacgataccatataacatgcattgtgatgagaatatatattatctagcatatttatttcaatttgaacaattatgatgttaggatgatat |
31794682 |
T |
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| Q |
404 |
tgtaaaagctactactatt |
422 |
Q |
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| T |
31794681 |
tgtaaaagctactactatt |
31794663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 31785412 - 31785378
Alignment:
| Q |
136 |
tgggacagttatcatcctacagagaaagcttacaa |
170 |
Q |
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| T |
31785412 |
tgggacagttatcatcccacagagaaagcttacaa |
31785378 |
T |
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