View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7289_high_6 (Length: 326)
Name: NF7289_high_6
Description: NF7289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7289_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 3572498 - 3572808
Alignment:
| Q |
1 |
tattggtgataagccagtttattgtaaccaattcttttactttgacagcatcaaaacgaattccatgatagtaactccataagcaattgatcaaccttta |
100 |
Q |
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| T |
3572498 |
tattggtgataagccagtttattgtaaccaattcttttactttgacagcatcaaaacgaattccatgatagtaactccataagcaattgatcaaccttta |
3572597 |
T |
|
| Q |
101 |
acaagttctttcccattaactcacatccctccatgttatttgccttcaactcttaatccagcaacactcatttcctttttatcaacaacataaattaact |
200 |
Q |
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| T |
3572598 |
acaagttctttcccattaactcacatccctccatgttgtttgccttcaactcttaatccagaaacactcatttcctttttatcaacaacataaattaact |
3572697 |
T |
|
| Q |
201 |
atttaggcaggaggattagtcctttatgcatacatgtaatcaaaatcagaacaattgattttgcttttcgattttcctttcaccttctatcttttgtaat |
300 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3572698 |
atttgggcaggaggattagtcctttatgcatacatgtaatcaaaatcagaacaattgattttgcttttcaattttcctttcaccttctatcttttgtaat |
3572797 |
T |
|
| Q |
301 |
atctctaacat |
311 |
Q |
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||| ||||||| |
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| T |
3572798 |
atccctaacat |
3572808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 188 - 311
Target Start/End: Original strand, 3570647 - 3570770
Alignment:
| Q |
188 |
acataaattaactatttaggcaggaggattagtcctttatgcatacatgtaatcaaaatcagaacaattgattttgcttttcgattttcctttcaccttc |
287 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||| |||| ||||||||| |||||| |||||||||| |
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| T |
3570647 |
acatatattaactatttaggcaggaggataagtcctttatgcattcatgtaatcaaaaacagaacaactgatcttgcttttcaattttcatttcaccttc |
3570746 |
T |
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| Q |
288 |
tatcttttgtaatatctctaacat |
311 |
Q |
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|||||| ||||||||||| ||||| |
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| T |
3570747 |
tatcttgtgtaatatctccaacat |
3570770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 209 - 303
Target Start/End: Original strand, 3551030 - 3551124
Alignment:
| Q |
209 |
aggaggattagtcctttatgcatacatgtaatcaaaatcagaacaattgattttgcttttcgattttcctttcaccttctatcttttgtaatatc |
303 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||||| || | |||||||| |||||||||||||| ||||||| | ||||||||| |
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| T |
3551030 |
aggaggattaatcctttatgcatacatgtaatcaaacccagaacagttattcttgcttttggattttcctttcactttctatcctgtgtaatatc |
3551124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 211 - 311
Target Start/End: Original strand, 3560051 - 3560150
Alignment:
| Q |
211 |
gaggattagtcctttatgcatacatgtaatcaaaatcagaacaattgattttgcttttcgattttcctttcaccttctatcttttgtaatatctctaaca |
310 |
Q |
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||||||||||||||||||||||||||||||||||| || | | ||||| ||||||| ||||| |||||| |||||||||||| |||| |||||| |||| |
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| T |
3560051 |
gaggattagtcctttatgcatacatgtaatcaaaagca-agcccttgatcttgctttgcgattgtccttttaccttctatcttgtgtagtatctccaaca |
3560149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 1685424 - 1685480
Alignment:
| Q |
255 |
ttgattttgcttttcgattttcctttcaccttctatcttttgtaatatctctaacat |
311 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
1685424 |
ttgatcttgcttttcgattttcctttcaccttctatcttgtgtaatatctccaacat |
1685480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 311
Target Start/End: Original strand, 3574150 - 3574211
Alignment:
| Q |
250 |
aacaattgattttgcttttcgattttcctttcaccttctatcttttgtaatatctctaacat |
311 |
Q |
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|||||||||| ||||||| |||||||| ||| ||||||||| | ||||||||||| ||||| |
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| T |
3574150 |
aacaattgatcttgctttaggattttccattctccttctatcctgtgtaatatctccaacat |
3574211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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