View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7289_high_8 (Length: 308)
Name: NF7289_high_8
Description: NF7289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7289_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 2391588 - 2391291
Alignment:
| Q |
1 |
atcaccatctaggttattcttctcctctgaaaggtcgagggttgctgtggagataatcaataaattggctatcgatgtcataaccatacaaactaatctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2391588 |
atcaccatctaggttattcttctcctctgaaaggtcgagggttgctgtggagataatcaataaattggctatcgatgtcataaccatacaaactaatctt |
2391489 |
T |
|
| Q |
101 |
tcggagtttgggaagtgccaaaaaatgattatcttcatctagcacaaaatcgaacttcctagcagaagtgtaatcagtgcagtctgtttccttgagaaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2391488 |
tcggagtttgggaagtgccaaaaaattattatcttcatctagcacaaaatcgaacttcctagcagaagtgtaatcactgcagtctgtttccttgagaaca |
2391389 |
T |
|
| Q |
201 |
agttcttcaagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccnnnnnnnttcgaaacaagtaagagaggtcaaatttttcat |
298 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
2391388 |
agttcttcgagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccaaaaaaattcggaacaagtaagagaggtcaaatttttcat |
2391291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 150
Target Start/End: Complemental strand, 2383063 - 2382915
Alignment:
| Q |
4 |
accatctaggttattcttctcctctg--aaaggtcgagggttgctgtggagataatcaataaattggctatcgatgtcataaccatacaaactaatcttt |
101 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| | |||| || | ||||||| ||||| ||||||||||||| || |||||||||| |||||||| |
|
|
| T |
2383063 |
accatctaagttattcttctcctctgtgaaaggtccacggtttttgcgaagataattaataatttggctatcgatggaattaccatacaaattaatcttt |
2382964 |
T |
|
| Q |
102 |
cggagtttgggaagtgccaaaaaatgattatcttcatctagcacaaaat |
150 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
2382963 |
cggagtttgggaagtgccaaaaattgattatcatcatctagcacaaaat |
2382915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 2380707 - 2380558
Alignment:
| Q |
4 |
accatctaggttattcttctcctc--tgaaaggtcgagggttgctgtggagataatcaataaattggctatcgatgtcataaccatacaaactaatcttt |
101 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||| | |||| || ||||||||| ||||| ||||||||||||| | ||||||||||||||||||| |
|
|
| T |
2380707 |
accatctaagttattcttctcctccgtgaaaggtccacggtttttgcggagataattaataatttggctatcgatggagttaccatacaaactaatcttt |
2380608 |
T |
|
| Q |
102 |
cggagtttgggaagtgccaaaaaatgattatcttcatctagcacaaaatc |
151 |
Q |
| |
|
|||||||| |||||||| ||||| | |||||| ||||||||| ||||||| |
|
|
| T |
2380607 |
cggagttttggaagtgctaaaaatttattatcatcatctagctcaaaatc |
2380558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 184 - 298
Target Start/End: Complemental strand, 2381777 - 2381663
Alignment:
| Q |
184 |
ctgtttccttgagaacaagttcttcaagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccnnnnnnnttcgaaacaagtaagaga |
283 |
Q |
| |
|
|||||| ||||||||| |||||||| ||||||||||||||||| |||||||| |||| ||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
2381777 |
ctgttttcttgagaacgagttcttcgagtaaagggaagcaatcgacaatgaataagaaatccttcttgttgatccaagtaatttcagaacaagtaagaga |
2381678 |
T |
|
| Q |
284 |
ggtcaaatttttcat |
298 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2381677 |
ggtcaaatttttcat |
2381663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 258
Target Start/End: Complemental strand, 2380512 - 2380439
Alignment:
| Q |
185 |
tgtttccttgagaacaagttcttcaagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatcc |
258 |
Q |
| |
|
||||||||||||||| ||| |||||||| |||||||||||||| |||||||| | ||||||||||| ||||||| |
|
|
| T |
2380512 |
tgtttccttgagaacgagtacttcaagtgaagggaagcaatcagcaatgaagtaaatatccttcttattgatcc |
2380439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 2381921 - 2381814
Alignment:
| Q |
4 |
accatctaggttattcttctcctctg--aaaggtcgagggttgctgtggagataatcaataaattggctatcgatgtcataaccatacaaactaatcttt |
101 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||||| | ||||| || ||||||||| ||||||||||| ||| |||| | |||| ||||||||||||| |
|
|
| T |
2381921 |
accatctaagttattcttctactctgtgaaaggtccacggttgttgcggagataattaataaattggcgatcaatgtaaataccacgcaaactaatcttt |
2381822 |
T |
|
| Q |
102 |
cggagttt |
109 |
Q |
| |
|
|||||||| |
|
|
| T |
2381821 |
cggagttt |
2381814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 2533992 - 2534047
Alignment:
| Q |
201 |
agttcttcaagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgat |
256 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| ||||||| ||| ||||||||||| |
|
|
| T |
2533992 |
agttcttcaagtaaagggaaacaatcagcaatcaagaagagatcattcttgttgat |
2534047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 2547223 - 2547278
Alignment:
| Q |
201 |
agttcttcaagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgat |
256 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||| | ||| |||||| |||| |
|
|
| T |
2547223 |
agttcttcaagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgat |
2547278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 12124522 - 12124563
Alignment:
| Q |
199 |
caagttcttcaagtaaagggaagcaatcaacaatgaagaaga |
240 |
Q |
| |
|
|||||||||| ||||||||||| |||||| |||||||||||| |
|
|
| T |
12124522 |
caagttcttctagtaaagggaaacaatcagcaatgaagaaga |
12124563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 2382877 - 2382813
Alignment:
| Q |
185 |
tgtttccttgagaacaagttcttcaagtaaagggaagcaatcaacaatgaagaagatatccttct |
249 |
Q |
| |
|
||||||||||||||| ||| | || |||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
2382877 |
tgtttccttgagaacgagtacatcgagtaaagggaagcaattggcaatgaaatagatatccttct |
2382813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 2625628 - 2625588
Alignment:
| Q |
201 |
agttcttcaagtaaagggaagcaatcaacaatgaagaagat |
241 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
2625628 |
agttcttcgagtaaagggaaacaatcaacaataaagaagat |
2625588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University