View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7289_low_10 (Length: 284)
Name: NF7289_low_10
Description: NF7289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7289_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 1607253 - 1606997
Alignment:
| Q |
17 |
acattatggtttctcttatctagatttgactcatctaaagtgagcaacctattttagagttttagagtataaagtgtgtattatccgttcatttacaaat |
116 |
Q |
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| T |
1607253 |
acattatggtttctcttatctagatttgactcatctaaagtgagcaacctattttagagttttagagtataaagtgtgtattatccgttcatttacaaat |
1607154 |
T |
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| Q |
117 |
caaagataaatatatgtatgtgtatgcacatttataataagtgatggtgtgttcagtgttgaaatatcaactatcgatttccttactttactctctgctt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1607153 |
caaagataaatatatgtatgtgtatgcacatttataataagtgatggtgtgttcagtgttgaaatatcaactatcgatttccttactttactctctgctt |
1607054 |
T |
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| Q |
217 |
gttttagagcagtgaaatctttatcatataggtttgatatttgtgcttctttttctt |
273 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| || |||||||| |
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| T |
1607053 |
gttttagagcagcgaaatctttatcatataggtttgatatttgtgtttttttttctt |
1606997 |
T |
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