View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7289_low_12 (Length: 283)
Name: NF7289_low_12
Description: NF7289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7289_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 34873885 - 34873623
Alignment:
| Q |
1 |
acaagcttcaagaactatgtcnnnnnnnctcatatcctcttctaaaataccaaacaacccatgaaggaccactgcacaatcctcttttctcatcaactgt |
100 |
Q |
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| T |
34873885 |
acaagcttcaagaactatgtcaaaaaaactcataccctcttcccgaataccaaacaacccatgaaggaccactgcacaatcctcttttctcatcaaccgt |
34873786 |
T |
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| Q |
101 |
taccgttaagtccatttccttcacttcaccagaactagcaagcacccttaaggcatctcaagaatttgttgcgatggttgcttttcatcatttcctgcaa |
200 |
Q |
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| T |
34873785 |
taccgttaagtccatttccttcacttcaccagaacctgcaagcacccttaaggcatctcaagagtttgttgcgatggttgcttttcatcatttcctgcaa |
34873686 |
T |
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| Q |
201 |
aatgaaaacaacagttaagtgttgcaatctatgatgtttctttcctcaactgatttataaatg |
263 |
Q |
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| T |
34873685 |
aatgaaaacaccagttaagtcttgcaatctatgatgtttctttcctcaactgatatataaatg |
34873623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 3 - 263
Target Start/End: Original strand, 34871741 - 34872001
Alignment:
| Q |
3 |
aagcttcaagaactatgtcnnnnnnnctcatatcctcttctaaaataccaaacaacccatgaaggaccactgcacaatcctcttttctcatcaactgtta |
102 |
Q |
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| T |
34871741 |
aagcttcaagaactatgtcaaaaaaactcttacccacttcccaaataccaaacaacccatgaaggaccactgcacaatcctcttttttcatcaaccgtta |
34871840 |
T |
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| Q |
103 |
ccgttaagtccatttccttcacttcaccagaactagcaagcacccttaaggcatctcaagaatttgttgcgatggttgcttttcatcatttcctgcaaaa |
202 |
Q |
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| T |
34871841 |
ccgttaagtctatttccttcacttcaccaaaaccagcaagcacccttaaggcatctcaagagtttgctgcgatggttgcttttcatcatttcctgcaaaa |
34871940 |
T |
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| Q |
203 |
tgaaaacaacagttaagtgttgcaatctatgatgtttctttcctcaactgatttataaatg |
263 |
Q |
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| T |
34871941 |
tgaaaacaacagttaagtcttgcaatccatgatgtttctttcctcaactgatttataaatg |
34872001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 193
Target Start/End: Original strand, 9911056 - 9911247
Alignment:
| Q |
2 |
caagcttcaagaactatgtcnnnnnnnctcatatcctcttctaaaataccaaacaacccatgaaggaccactgcacaatcctcttttctcatcaactgtt |
101 |
Q |
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| T |
9911056 |
caagcttcaagaactatgtcaaaaaaattcataccctcttcccgaataccaaacaacccgtgaaggaccaccacacaattctcgtttctcaacaaccgtt |
9911155 |
T |
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| Q |
102 |
accgttaagtccatttccttcacttcaccagaactagcaagcacccttaaggcatctcaagaatttgttgcgatggttgcttttcatcattt |
193 |
Q |
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| T |
9911156 |
actgttaactccatttccttctcttctcctgaaccagcacgcaccattaagctgtctcaagattctgctgccatggttgcttttcatcattt |
9911247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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