View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7289_low_13 (Length: 262)

Name: NF7289_low_13
Description: NF7289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7289_low_13
NF7289_low_13
[»] chr3 (2 HSPs)
chr3 (1-246)||(29208141-29208386)
chr3 (69-161)||(55469937-55470029)
[»] chr5 (4 HSPs)
chr5 (76-153)||(39647243-39647320)
chr5 (73-122)||(39647139-39647188)
chr5 (63-121)||(8928401-8928459)
chr5 (71-137)||(11257713-11257779)
[»] chr7 (4 HSPs)
chr7 (74-135)||(2219538-2219599)
chr7 (63-148)||(23117361-23117446)
chr7 (53-137)||(24672266-24672350)
chr7 (71-122)||(23218630-23218681)
[»] chr1 (2 HSPs)
chr1 (71-136)||(33651641-33651706)
chr1 (71-122)||(6025980-6026031)
[»] chr6 (2 HSPs)
chr6 (71-122)||(2732936-2732987)
chr6 (99-137)||(17333528-17333566)
[»] chr4 (1 HSPs)
chr4 (76-122)||(13298529-13298575)
[»] chr2 (1 HSPs)
chr2 (92-136)||(6626750-6626794)


Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 29208386 - 29208141
Alignment:
Q  1 aaaatagtttttgttcgaactcagctacgcaacggtgctatatatagcgtcattgtatccaatatttcaaaacattttgtactaaacagcatatcataga 100  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | ||    
T  29208386 aaaatagtttttgttcaaactcagctacgcaacagtgctatatatagcgtcattgtatccactatttcaaaacattttgtactaaacagcgtatcgtgga 29208287  T
Q  101 acaataacgatttgttcaaattatgttacactatagcgttatagcaccactatttaacaacgctattttacaatgttgttagacaaagagaagtcattga 200  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |    
T  29208286 acaataacgatttgttcaaattctattacactatagcgttatagcaccactatttaacaacgctattttacaatgttgttggacaaagagaagtcaataa 29208187  T
Q  201 agatgattctcatgcacttgttttgttctatttcatggttcatctt 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29208186 agatgattctcatgcacttgttttgttctatttcatggttcatctt 29208141  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 161
Target Start/End: Original strand, 55469937 - 55470029
Alignment:
Q  69 aaaacattttgtactaaacagcatatcatagaacaataacgatttgttcaaattatgttacactatagcgttatagcaccactatttaacaac 161  Q
    |||| ||||||||||| |||||||| ||  |||||||| || |||||| |||||  | |||||||||||| |||||| |||||||||||||||    
T  55469937 aaaatattttgtactacacagcataccacggaacaatagcggtttgtttaaattccgctacactatagcggtatagcgccactatttaacaac 55470029  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 153
Target Start/End: Original strand, 39647243 - 39647320
Alignment:
Q  76 tttgtactaaacagcatatcatagaacaataacgatttgttcaaattatgttacactatagcgttatagcaccactat 153  Q
    ||||| ||||||||||||||  |||||||||||||||| ||||||||    |||| ||||||||||||||||||||||    
T  39647243 tttgtgctaaacagcatatcgcagaacaataacgatttattcaaattccactacagtatagcgttatagcaccactat 39647320  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 39647139 - 39647188
Alignment:
Q  73 cattttgtactaaacagcatatcatagaacaataacgatttgttcaaatt 122  Q
    |||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  39647139 cattttgtactaaatagcatatcgcagaacaataacgatttgttcaaatt 39647188  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 8928401 - 8928459
Alignment:
Q  63 tatttcaaaacattttgtactaaacagcatatcatagaacaataacgatttgttcaaat 121  Q
    ||||||| || ||||||||||||| ||| |||||| |||||||| ||||||||||||||    
T  8928401 tatttcagaatattttgtactaaatagcgtatcatcgaacaatagcgatttgttcaaat 8928459  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 11257779 - 11257713
Alignment:
Q  71 aacattttgtactaaacagcatatcatagaacaataacgatttgttcaaattatgttacactatagc 137  Q
    |||||||||||||||| |||||||| || ||||||| ||||||||||| |||  | |||||||||||    
T  11257779 aacattttgtactaaatagcatatcgtataacaatagcgatttgttcatattccgctacactatagc 11257713  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 2219538 - 2219599
Alignment:
Q  74 attttgtactaaacagcatatcatagaacaataacgatttgttcaaattatgttacactata 135  Q
    ||||||||||||| ||||||||| |||||||||||||| |||||||||| |  |||||||||    
T  2219538 attttgtactaaatagcatatcagagaacaataacgatatgttcaaattctactacactata 2219599  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 148
Target Start/End: Original strand, 23117361 - 23117446
Alignment:
Q  63 tatttcaaaacattttgtactaaacagcatatcatagaacaataacgatttgttcaaattatgttacactatagcgttatagcacc 148  Q
    ||||||| |||||||||| ||||| |||||||||| ||| |||| ||||||||||||||| || ||  | ||||||||||| ||||    
T  23117361 tatttcacaacattttgtgctaaatagcatatcatggaaaaatagcgatttgttcaaattctgctattcaatagcgttataacacc 23117446  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 24672266 - 24672350
Alignment:
Q  53 ttgtatccaatatttcaaaacattttgtactaaacagcatatcatagaacaataacgatttgttcaaattatgttacactatagc 137  Q
    ||||| ||| ||||| |||| ||| ||||||||| ||| |||  |||||||||||| |||||| ||||||||||||  |||||||    
T  24672266 ttgtagccactatttgaaaatattatgtactaaatagcgtattgtagaacaataactatttgtgcaaattatgttatgctatagc 24672350  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 23218630 - 23218681
Alignment:
Q  71 aacattttgtactaaacagcatatcatagaacaataacgatttgttcaaatt 122  Q
    ||||||||||| |||| ||| |||||||||||||| ||||||||| ||||||    
T  23218630 aacattttgtattaaatagcgtatcatagaacaatgacgatttgtccaaatt 23218681  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 33651706 - 33651641
Alignment:
Q  71 aacattttgtactaaacagcatatcatagaacaataacgatttgttcaaattatgttacactatag 136  Q
    |||||||| ||||||| |||||||  ||||||||||||||||||||| |||  || ||||||||||    
T  33651706 aacattttatactaaatagcatattgtagaacaataacgatttgttcgaatactgctacactatag 33651641  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 6025980 - 6026031
Alignment:
Q  71 aacattttgtactaaacagcatatcatagaacaataacgatttgttcaaatt 122  Q
    |||||||||||||||| ||||||||   |||||||||| |||||||||||||    
T  6025980 aacattttgtactaaatagcatatcgcggaacaataactatttgttcaaatt 6026031  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 2732987 - 2732936
Alignment:
Q  71 aacattttgtactaaacagcatatcatagaacaataacgatttgttcaaatt 122  Q
    |||||||||||||||| ||||||||  | ||||||| |||||||||||||||    
T  2732987 aacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt 2732936  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 17333528 - 17333566
Alignment:
Q  99 gaacaataacgatttgttcaaattatgttacactatagc 137  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  17333528 gaacaataacgatttgttcaaattacgctacactatagc 17333566  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 13298575 - 13298529
Alignment:
Q  76 tttgtactaaacagcatatcatagaacaataacgatttgttcaaatt 122  Q
    ||||||||||| ||||||||| |||||||||  ||||||||||||||    
T  13298575 tttgtactaaatagcatatcacagaacaatagtgatttgttcaaatt 13298529  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 6626750 - 6626794
Alignment:
Q  92 tatcatagaacaataacgatttgttcaaattatgttacactatag 136  Q
    |||||| |||||||| ||||||||||||||| |||||| ||||||    
T  6626750 tatcatggaacaatagcgatttgttcaaattttgttactctatag 6626794  T

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