View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7289_low_15 (Length: 248)

Name: NF7289_low_15
Description: NF7289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7289_low_15
NF7289_low_15
[»] chr4 (11 HSPs)
chr4 (16-248)||(2391069-2391301)
chr4 (16-248)||(2381441-2381673)
chr4 (16-248)||(2380186-2380409)
chr4 (28-245)||(2382562-2382780)
chr4 (144-181)||(2525588-2525625)
chr4 (140-172)||(2376407-2376439)
chr4 (202-248)||(2621399-2621445)
chr4 (136-181)||(2467378-2467423)
chr4 (203-248)||(2534079-2534124)
chr4 (135-179)||(2477421-2477465)
chr4 (220-248)||(2486073-2486101)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 2391069 - 2391301
Alignment:
Q  16 atcacccaacaaaccatccctttcattcctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttctctc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2391069 atcacccaacaaaccatccctttcattcctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttctctc 2391168  T
Q  116 aacacaatcaccccaacacgcttcttacccaaatctccactttccctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgg 215  Q
    ||  ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  2391169 aatgcaatcgccccaacacgcttcttacccaaatctccactttccctttagtcctcagatcgctcattctttccaacttctacaaaatccctaaagatgg 2391268  T
Q  216 gttccgagctttgtccaaaaagatgaaaaattt 248  Q
    |||||||||||||||||||||||||||||||||    
T  2391269 gttccgagctttgtccaaaaagatgaaaaattt 2391301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 2381441 - 2381673
Alignment:
Q  16 atcacccaacaaaccatccctttcattcctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttctctc 115  Q
    ||||||| ||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||| |||||| |||||||| |||||| ||||    
T  2381441 atcaccctacaaaccatccctttcattcctcaactcttccaacgcttctctagtgtcacatccctcaatctcgcatccagcaacctcacttacttttctc 2381540  T
Q  116 aacacaatcaccccaacacgcttcttacccaaatctccactttccctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgg 215  Q
     ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||| | ||||| || |  ||||| |||||||||||    
T  2381541 tacacaatcaccccaacatgcttcttacccaaatctccgctttccctttagacctcaaatcgctcattttctccaagttttttaaaatccctaaagatgg 2381640  T
Q  216 gttccgagctttgtccaaaaagatgaaaaattt 248  Q
    |||||||||||||||||||||||||||||||||    
T  2381641 gttccgagctttgtccaaaaagatgaaaaattt 2381673  T

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Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 2380186 - 2380409
Alignment:
Q  16 atcacccaacaaaccatccctttcattcctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttctctc 115  Q
    ||||||||||||||||||||||| |||||||   |||| ||| |||    |||  |||||||||||||||||||||||| |||||||          |||    
T  2380186 atcacccaacaaaccatcccttttattcctcgcctcttgcaaaggtgtcgtaacatcacatccctcaatctcacatccatcaacctcc---------ctc 2380276  T
Q  116 aacacaatcaccccaacacgcttcttacccaaatctccactttccctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgg 215  Q
    || ||||||||| ||||||||||||||| ||||||||| |||| |||||||| |||| |||||||||||| |||||| ||| |||||| || ||| ||||    
T  2380277 aatacaatcacctcaacacgcttcttacacaaatctccgctttacctttagatctcaaatcgctcattctctccaacctcttcaaaatcccgaaaaatgg 2380376  T
Q  216 gttccgagctttgtccaaaaagatgaaaaattt 248  Q
     || ||| |||||||||||||||||||||||||    
T  2380377 attgcgacctttgtccaaaaagatgaaaaattt 2380409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 245
Target Start/End: Original strand, 2382562 - 2382780
Alignment:
Q  28 accatccctttcattcctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttctctcaacacaatcacc 127  Q
    |||||||||||||||||||   |||||| | || || |||||||||||||||||||| ||||||||  |||||||| | ||||||||||| ||||| |||    
T  2382562 accatccctttcattcctcgcctcttccgaaggctccctaatgtcacatccctcaatatcacatccctcaacctcactcacttctctcaatacaattacc 2382661  T
Q  128 ccaacacgcttctta-cccaaatctccactttccctttagacctcagatcgctcattctttccaacttctacaaaattcctaaagatgggttccgagctt 226  Q
     ||||||||||||||  | |||||||   ||  |||||||| |||| ||| |||||||| |||||| ||| |||||| | || | |||| || |||||||    
T  2382662 tcaacacgcttcttatgcaaaatctctgtttcacctttagatctcaaatcactcattctctccaacctcttcaaaatccatataaatggattgcgagctt 2382761  T
Q  227 tgtccaaaaagatgaaaaa 245  Q
    |||||||||||||||||||    
T  2382762 tgtccaaaaagatgaaaaa 2382780  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 2525625 - 2525588
Alignment:
Q  144 ccaaatctccactttccctttagacctcagatcgctca 181  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  2525625 ccaaatctccactttccctttagacctcaaatcgctca 2525588  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 172
Target Start/End: Original strand, 2376407 - 2376439
Alignment:
Q  140 ttacccaaatctccactttccctttagacctca 172  Q
    |||||||||||||||||||||||||||||||||    
T  2376407 ttacccaaatctccactttccctttagacctca 2376439  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 2621399 - 2621445
Alignment:
Q  202 attcctaaagatgggttccgagctttgtccaaaaagatgaaaaattt 248  Q
    ||||||| ||||||||| |||||||| |||||||| |||||||||||    
T  2621399 attcctacagatgggttgcgagctttctccaaaaatatgaaaaattt 2621445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 2467423 - 2467378
Alignment:
Q  136 cttcttacccaaatctccactttccctttagacctcagatcgctca 181  Q
    ||||||||| ||||||||||||||||||| ||||||| ||| ||||    
T  2467423 cttcttaccaaaatctccactttccctttggacctcaaatccctca 2467378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 2534124 - 2534079
Alignment:
Q  203 ttcctaaagatgggttccgagctttgtccaaaaagatgaaaaattt 248  Q
    ||||| || ||| |||||||||||||||||| ||||||||||||||    
T  2534124 ttcctgaaaatgagttccgagctttgtccaagaagatgaaaaattt 2534079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 2477465 - 2477421
Alignment:
Q  135 gcttcttacccaaatctccactttccctttagacctcagatcgct 179  Q
    ||||||||||||||| ||||||||  || ||||||||||||||||    
T  2477465 gcttcttacccaaatatccactttagctatagacctcagatcgct 2477421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 2486101 - 2486073
Alignment:
Q  220 cgagctttgtccaaaaagatgaaaaattt 248  Q
    |||||||||||||||||||||||||||||    
T  2486101 cgagctttgtccaaaaagatgaaaaattt 2486073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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